RNA id: AMCG00001175


Basic Information

Item Value
RNA id AMCG00001175
length 1536
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00001175
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17793393 ~ 17804682 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGTAGGCAAGATGGATGAGATCAGGAGACATAAGCGCGGGCGGCCCGGGACGCAAACCCAGACGAAAACAACCAACAGCAAACAGAAAGAGCTCATGAGTCAAGATGAGATGACAGCCATGGACAAAATCATGGAGACCAATGAATTGCGAACCGCCCTGACCTTGCAGGGAACCAGCTTCAGAGAGGGCGACATTGCAGTGACCAATAAGAGGAGGTCAGAGAACTGCTTTGCCCGGAGCTGCTTGTGGCCCAAGTCTGTGGACGGATTTGTGTATGTTCCCTATAACATGTCAACTGAGTACAATGAAATTGACAGAATCACAATTGAAAGCGGGATGGAGGAGATTGCTAATGGCACCTGTATCAGGTTTGTGCCATGGACTCATCAAAGGAACTACCTGGACATCCAGCCCAAGTCTGGCTGCTGGTCCTTCCTCGGTGTCCACGGTGGGGCTCAGATGCTGTCCCTCCAGACTCCAGGCTGCATGTGGTCCGGCATCGCCTCCCATGAGCTCATGCACGCTCTAGGCTTCGTGCACGAACAGTCCCGGGCTGACAGGGACAAGTACATCACCATTCTGTGGGCCAACATCTGGAAAGATCGTGTGAATAATTTTGAGAGGTACAAGACCAATAATCTGGACACCCCCTATGACTATAGCTCCATTATGCACTTTGGGAAGTACGCCTACTCCGAAGATGGTGACCCAACCATTGTGCCCAAACCCAACCCAAACATCCAAATCGGGCAGCGGTTCGGGCCCAGTGCTATCGACAAGATGAAAATCAATAAACTCTACAAGTGTGGAGAATTTGTGGCCCTGAAGGATATGAACGCAATGGACAAAATCCTGATAACCAACGAGTATCATTTGTCCCCAAAACTCACTGGCCTGACTTTTAAAGAAGGGGACATTGCAGTCTCAAGCAAgcgcagtgccatcagctgtgCAGGGAACAGCTGCCTGTGGCCCAAGTCTGTGGACGGCTACGTGTACGTTCCTTACATCATCTCTCCGGATTACAACGACATGGACAGAATAACCATTGAGATTGGCATGCAGGACATCTCAGCCAGCACTTGTGTGAAGTTCGTGCCACGCAGCCACGAAGCCAACTATTTGGACATCCAGAATAAACTTGGGTGCTGGTCCTTCCTTGGCGTCAATGGTGGCACCCAGCCGCTGTCCCTGCAGGCCCCGGGCTGCATGTGGTCTGGCATTGCCACCCACGAGTTCATGCATGCGCTGGGCTTCGTCCACGAGCAGTCCCGCTCCGACAGAGACGACCACGTCACCATCGTGTGGGAGAACATCCTGAAAGACCGGGAGCATAACTTCCAGaagtacaatacaaacaatCTGAACACCATCTATGACTACGGATCCTTAATGCACTACGGAAAGTATGCTTTCTCAGAGGACGGTGGACCAACAATCATCCCCAAACCAAACCCTAATGTTGCAATTGGACAGCGCGAAGGCCCCAGCACcctggacatacacaaaataaacctcCTCTATGAATGT

Function

GO: NA

KEGG:

id description
K08778 ASTL; astacin-like metalloendopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162082 lncRNA upstream 100867 17691507 ~ 17692526 (+) True G129255
TU162040 lncRNA upstream 242602 17487392 ~ 17550791 (+) True G129221
TU161853 lncRNA upstream 646324 17144190 ~ 17147069 (+) True G129080
TU161844 lncRNA upstream 901032 16889638 ~ 16892361 (+) True G129071
TU161684 lncRNA upstream 1731214 16022258 ~ 16062179 (+) True G128958
TU162181 lncRNA downstream 167327 17972009 ~ 17976936 (+) True G129343
TU162309 lncRNA downstream 750469 18555151 ~ 18557104 (+) True G129442
TU162310 lncRNA downstream 750469 18555151 ~ 18557104 (+) False G129442
TU162442 lncRNA downstream 992168 18796850 ~ 18802040 (+) True G129552
TU162443 lncRNA downstream 992168 18796850 ~ 18802040 (+) False G129552
AMCG00001168 mRNA upstream 10772 17772945 ~ 17782621 (+) True AMCG00001168
AMCG00001170 mRNA upstream 37724 17747050 ~ 17755669 (+) True AMCG00001170
AMCG00001169 mRNA upstream 67807 17724248 ~ 17725586 (+) True AMCG00001169
AMCG00001162 mRNA upstream 371527 17421069 ~ 17421866 (+) True AMCG00001162
AMCG00001161 mRNA upstream 395374 17384589 ~ 17398019 (+) True AMCG00001161
AMCG00001174 mRNA downstream 53670 17858352 ~ 17866887 (+) True AMCG00001174
AMCG00001173 mRNA downstream 67835 17872517 ~ 17880389 (+) True AMCG00001173
AMCG00001178 mRNA downstream 85801 17890483 ~ 17897403 (+) True AMCG00001178
AMCG00001180 mRNA downstream 96368 17901050 ~ 17902506 (+) True AMCG00001180
AMCG00001177 mRNA downstream 146915 17951597 ~ 17971233 (+) True AMCG00001177
TU161504 other upstream 2372513 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 2619246 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 5781968 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 7639206 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 9173198 8617199 ~ 8620195 (+) True G127134
TU162207 other downstream 218378 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 741211 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 750469 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 1083709 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 1238622 19043304 ~ 19142145 (+) True G129594

Expression Profile