RNA id: AMCG00001178


Basic Information

Item Value
RNA id AMCG00001178
length 1913
RNA type mRNA
GC content 0.48
exon number 8
gene id AMCG00001178
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17890483 ~ 17897403 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAACTGCAGCCCGCCGCGCGTCTGCGTCCGGACGTCACTTCCGCCGGAGCGCGGCTGCGTCGCtgggagagaaaggagagaggcAGCCTTGCGCACGGCAGTCTCGCTGCTGTAATTGAGACGCAATTTAGAGAAATCTCACGACGACATGAGCGACAACGAGAAGGATTTTGTCAAGCGGGAGTCCCGCTCTGCCTCCCGGAGTGTGAGTCCACGGGTGTCAGTCAAGTCTGCCAGCCACTCTCCTGCTCAGTCCCCAGCCCGCTCCTGCTCCAAGGATGGGTCCCGCCACTCCAAGTCTAAGTCTCGCTCCCGCTCCCGCTCCAAGTCCAGGTCTCGATCTCACCGCAGCTCTCGGAGACGCTACACGCACTCGCGCTCTCGTTCACGCTCCCACCGGCGGCGCTCCAGGAGCCGGTCCTACAGCGGGGAATACCGACGCAGGCGCAGCCACAGCCACTCCCCCATGTCCAACCGCCGGCGCCATGTTGGCAACCGGGCAAATCCAGACCCCAACAACTGCTTGGGAGTGTTTGGTCTCAGTCTGTACACAACTGAGAGAGACCTGAGAGAAGTATTCTCAAAATATGGGCCACTCTCTGATGTCAGCATAGTTTATGACCAGCAGTCGCGTCGCTCCCGAGGATTTGCGTTTGTCTACTTTGAGAATAAAGAAGATTCTAAAGAAGCTAAGGAGCGTGCTAATGGAATGGAACTTGACGGCCGCAGAATCAGAGTGGATTTCTCCATCACGAAGAGGCCGCACACCCCCACACCTGGGATCTATATGGGAAGGCCTACATATGGGGGAGGTGGCAGCAGTGGTGGTGGCAGCGGCGGCAGTGGCGGCGGCGGTGGAGGTGGCAGCGGCGGCggtggcggcggcggcggcggcagcagcagtTCTCGGAGATCTCGAGATTACTATGACCGAGGGTATGACCGAGGGTATGACCGCTATGACGACCGGGACTATTACAGGTCCTACAGACGCAGATCCCCATCTCCATACTACAGCCGTGGAGCGTATCGATCACGGTCCAGGTCTCGCTCCTACTCTCCCCgtCACTACTAACAGACCTGATTTCCAGCTACCTTCAATGAAGATGtttcggtttgtttttgttttttggaagggTGGGACGTAACTGAGGATGGGGTTGGGTTTAGACTTTTTTtagctgtttttagtttttgttttcacatactcgtaaatgttttgaatttatttgtaCCTTTAAACTTTATGGACTACTGCTTTGCttttccccatctccccccacagTTGGATGCTTATGTGcttttcccatttttattttcttcagactaaatgtgtttttgtaaacaGAGCTTCTAGAGGTGTTTGTAATGGCTTATGGAGCTCTTATGGTAAACCATGTCATGTGGATATGCTTTTAAGTCAGGAGTAATTAAGCAATAAACTGCTTCTTTACACAACTGCCTATTGTTAAATTGTACTCAGTCATTCAACATGTggaattttatattatttttaaagtcataATTTTATCCTAGGTTTGTTAAATCCTCTATTAAAATGATTTGGATATTTTTAGATGCATTTGTTTAAGATTGTGTTCTTCCTTCTTTTTGCAATCTGTTGGTATTCCATGTCCCAGCTGGgattgttttcatacatttttccccTCCACTAAAATGGCACTTCAATGTAGTGGTCACAATTGTGTCCATAGTGTGTTTATAAGTAGGATTTCTTTCAGCTCCCTTTTTTTGGAAAGAGCTGCTTTCTGAaaactggatttatttatttattccaaacTAAAGATCAATCTTAAAACAACTTGATTATTCTTCAGTACATATGTTTGAACAAATATgggtgtgtatatgtatatatgtatgtgtatgtatatgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG:

id description
K12897 TRA2; transformer-2 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162082 lncRNA upstream 197957 17691507 ~ 17692526 (+) True G129255
TU162040 lncRNA upstream 339692 17487392 ~ 17550791 (+) True G129221
TU161853 lncRNA upstream 743414 17144190 ~ 17147069 (+) True G129080
TU161844 lncRNA upstream 998122 16889638 ~ 16892361 (+) True G129071
TU161684 lncRNA upstream 1828304 16022258 ~ 16062179 (+) True G128958
TU162181 lncRNA downstream 74606 17972009 ~ 17976936 (+) True G129343
TU162309 lncRNA downstream 657748 18555151 ~ 18557104 (+) True G129442
TU162310 lncRNA downstream 657748 18555151 ~ 18557104 (+) False G129442
TU162442 lncRNA downstream 899447 18796850 ~ 18802040 (+) True G129552
TU162443 lncRNA downstream 899447 18796850 ~ 18802040 (+) False G129552
AMCG00001173 mRNA upstream 10094 17872517 ~ 17880389 (+) True AMCG00001173
AMCG00001174 mRNA upstream 23596 17858352 ~ 17866887 (+) True AMCG00001174
AMCG00001175 mRNA upstream 85801 17793393 ~ 17804682 (+) True AMCG00001175
AMCG00001168 mRNA upstream 107862 17772945 ~ 17782621 (+) True AMCG00001168
AMCG00001170 mRNA upstream 134814 17747050 ~ 17755669 (+) True AMCG00001170
AMCG00001180 mRNA downstream 3647 17901050 ~ 17902506 (+) True AMCG00001180
AMCG00001177 mRNA downstream 54194 17951597 ~ 17971233 (+) True AMCG00001177
AMCG00001181 mRNA downstream 92473 17989876 ~ 18011937 (+) True AMCG00001181
AMCG00001183 mRNA downstream 115055 18012458 ~ 18024201 (+) True AMCG00001183
AMCG00001182 mRNA downstream 144959 18042362 ~ 18044599 (+) True AMCG00001182
TU161504 other upstream 2469603 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 2716336 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 5879058 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 7736296 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 9270288 8617199 ~ 8620195 (+) True G127134
TU162207 other downstream 125657 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 648490 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 657748 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 990988 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 1145901 19043304 ~ 19142145 (+) True G129594

Expression Profile