RNA id: AMCG00001181


Basic Information

Item Value
RNA id AMCG00001181
length 3346
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00001181
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17989876 ~ 18011937 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGTAAATAGTTTGACACTGGCACAGACGCAACACTTGCTGCTGTgggcattttttttgtatgtttgtttgtccgTTCCACGTCCTCTGTATACAAAATGATTTACGTAAGCTTTTCGCACAGTTTTGCTTGAGTATTATATATGCACCTTGCAAACAATTTGATGTATGGCACTAcgcagaaaataaaatctgagtAGCACACTGGCGTCTAGGTTATTCAGCataacatttataatgaaaGCTATATATTAACACTTAGCAGTATGAACTCGAAGCACATCGTTGGAGCTATGtaacttgttattttcttcagataCACGAAACCATTGTGCACCAGCCGCTTTTTAGAGGTAAACCCAATATGTTAAATGCGTTTTGAGAGCGAATGAGATTTGCAGAGTACCTGGGTAAAGTTCAGTCCAGAGTTAGTCTCCTCACAGGCTGCACTGTTCACAACTTCACGATTTGTGCCCGAGAAAATGGCAGTTTACACTCGTATCCCTGGCTCTGTCGCCGTAATAACGCTGAAAAACCCGCCTGTCAATGCACTTAGCTCAACAGTGCGTCAGGCAATTGTTCAGTCAGTGAGCAGAGCTGGTACTGACCCGGACGTGAAAGCTGTCGTGATTTGTGGGGAGAATGGGAAGTTTTGTGCCGGGGCCGATATTCGAGAGTTCTCTGGGCCATTTCGCGGCCCAGCCCTGGTGCCCCTGATCGACGACATAGAAGCCAGCGAGAAGCCTGTGGTGGCAGCCATCGAGGGGGTGGCCCTGGGAGGAGGCTTGGAGCTGGCGCTGGGCTGTCACTACCGCATTGCCCATATCAAGGCTCGGCTGGGGCTTCCTGAGGTCACCCTTGGGCTGCTCCCGGCTGCAGGGGGCACGCAGCGCCTGCCACGGCTCGCTGGGATTCCTGCCGCCCTCGACCTCATCACCACAGGGCGCCACGTGTCTGCCCAAGAGGCACTGAAGCTGGGGATAGTGGACCAAGTGACTGATGGAAACGCCAGAGACGTGGCAGTGGAGTTTGCACGGAAAATAGCAGGCCAGCCCACCGGTCCTCGCAGGGTGAGCTCCTTGCCAATCCAATGCCCCGCAAACCTGGATTCTCTGCTGGAACAGACACTGGTGAGGATCAGGCAGCGCGCTCGGGGGGCCATAGCACCGGTGGCCTGTGTGCAGGCTGTGCGGGCCGCGTCCACCTTGCCCTTCGCTCAGGGCATGCAGAGGGAACAGGAGCTGATGGCTGCGCTGTTCACCTCCGGACAGGCACGCGCTCTACAGTACCTGCACTTCGCCCAGAGGGCCGTGGGGAAGTGGAGCACCCCCAGTGGAGCACGCTGGGACAACACCAAGCCCAGGCCTGTCCGTAAAGTGGCTGTCATAGGCTTGGGGACCATGGGGAGAGGGATCACCGTGTGCCTGGTCAGAGCTGGGATCCCAGTCATTGCTGTGGAGATGGAGGAAAAGCAGCTGGAGGAGGGGAGAAGGGCTGTGCACGGCATGCTGGATCGGGATGCACAGAGACACGGGGCAGATCCAAATTTGAGCCTTGCCAGCTTCACCATCAATCTCCGGGATCTGGGGGATGTTGATCTGGTCATCGAGGCGGTGTTTGAAGATATGGCATTGAAGAAGAAGATCTTCAGGGAGCTGTCCTCAGTATGCAGGCCTGATGCCTTGCTGTGCACCAACACCTCTGGGCTGGACGTGGATGAGATCGCCTCTGTCACCCGCAGGCCAGATCTGGTGCTGGGTATGCATTTCTTTGCCCCGGCTCATATGATGAAGCTGCTGGAAGTTGTGCATGGACTTCACACCTCCCCTGTGGCCGTGGCAACTGCTATGGATCTGGGTAAGAAGCTAGAGAAAGTGGGCGTTCTGGTGGGAAACTGCCCTGGTTTTGTGGGGAACCGAATGCTGATGCCCTACACTGAGCAGGCCTACTTTCTCCTGGAAGAAGGAGCCAGACCAGAGGAGGTGGACCAAGCACTGGAAGAGTTTGGCTTTGCCATGGGTGTCTTCAGGATGGGGGATCTCTCTGGGCTGGATGTGGGATGGAAGATACGAATGGGGCTGGGGCTGACAGGGCCCACACTACCTGCTGGAACCCCTGTGCGCAGTCGAGGAGGCCACAGGTATAGCGCCGTCCCTGATATCCTCTGTGAGAAAGGGCGTATGGGCCAGAAGGCCGGCCGGGGCTGGTACCTGTATGAAAAACAAGGAGGCAGAGTTGCCAGGCCTGACCCTTGGCTTCAGAGCTTCCTGGAGGAGTACAGGAGCCTCCATGGTATCCAGGCACGTCACATTGACCCACAGGAGATCCTGGAGCGCTGCCTCTACTCACTCATCAACGAGGGCTTCCACATCCTGGAGGAGGGCATCGCCGCTGCCCCGCAGGATATCGATGCCATCTATGTGTTTGGCTACAGCTGGCCACGGCACACCGGGGGTCCAATGTTCTACGCCAGCATGGTGGGCCTTCCCCGAGTCCTGGACAAGCTGGAGCACTACCATCAGGCACATCCCGACATCCCCAGGCTGGAGCCCAGCAGCCTGCTGCGGAGGCTGGTCGCCAGCGGGAGCCCCCCACTGCAGCAGTGGAGAGATGTGATCAAAAAGCACAGGAGCCACCTGTGAACGACGCCTCAGAGAGAAGGCCGCCAGGAGGGTGATGACAGGGGCTGAGTCATGCTTCTTTAATTAAGCACAACATACTGTACAGCGCACTGCACTCAGCTCGTCTCACTGCCTTGGATTATGATTCAAGGGCATATTGAGCATATGCTGTACcataatatatttgattaaatcatCTAATGGTAATTACTGCACATGGAtcttcattttgaaacattatGCCAAGTTGAAtgcttgaaataaatataacatagCATAACTTAGTCTTTACTGTACTATTTTcccaaataacacaaaatgtttttcagtttcacttAGACTAACAGTGAAAGATTACAAATTAATAGAAGTTGTAAATAATATCCTAAAGACCTAACTATTTCCAGATGAATATTGATTGGATAATATCTCAGCCTTTAACTTTACAATGTATTGAAACCAGACTCTTAGGGATATTTCTTAATAAGTAATACTTATTAGAGCCATTTCCTTGTGCCTGATAGCCTTAAAGCAATctatttttgtcattattttttactCTGAAATATCATTAGTTTTACGTTATTCTGCTATGGTTTACTTTTGCCCTTTTGTAACCCAACTTTGTAAAACACTTTTGGATACTGTTTCCTGTGAAAGTAGGcctaatgtataaaataaaataaaataaaatattgattaaatgatTGATCAGTAGACTCTGC

Function

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050662 obsolete coenzyme binding molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K07514 EHHADH; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3,2-trans-enoyl-CoA isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162181 lncRNA upstream 12940 17972009 ~ 17976936 (+) True G129343
TU162082 lncRNA upstream 297350 17691507 ~ 17692526 (+) True G129255
TU162040 lncRNA upstream 439085 17487392 ~ 17550791 (+) True G129221
TU161853 lncRNA upstream 842807 17144190 ~ 17147069 (+) True G129080
TU161844 lncRNA upstream 1097515 16889638 ~ 16892361 (+) True G129071
TU162309 lncRNA downstream 543214 18555151 ~ 18557104 (+) True G129442
TU162310 lncRNA downstream 543214 18555151 ~ 18557104 (+) False G129442
TU162442 lncRNA downstream 784913 18796850 ~ 18802040 (+) True G129552
TU162443 lncRNA downstream 784913 18796850 ~ 18802040 (+) False G129552
TU162512 lncRNA downstream 1076211 19088148 ~ 19090238 (+) True G129597
AMCG00001177 mRNA upstream 18643 17951597 ~ 17971233 (+) True AMCG00001177
AMCG00001180 mRNA upstream 87370 17901050 ~ 17902506 (+) True AMCG00001180
AMCG00001178 mRNA upstream 92473 17890483 ~ 17897403 (+) True AMCG00001178
AMCG00001173 mRNA upstream 109487 17872517 ~ 17880389 (+) True AMCG00001173
AMCG00001174 mRNA upstream 122989 17858352 ~ 17866887 (+) True AMCG00001174
AMCG00001183 mRNA downstream 521 18012458 ~ 18024201 (+) True AMCG00001183
AMCG00001182 mRNA downstream 30425 18042362 ~ 18044599 (+) True AMCG00001182
AMCG00001184 mRNA downstream 225994 18237931 ~ 18252467 (+) True AMCG00001184
AMCG00001186 mRNA downstream 255139 18267076 ~ 18300206 (+) True AMCG00001186
AMCG00001191 mRNA downstream 312669 18324606 ~ 18347058 (+) True AMCG00001191
TU161504 other upstream 2568996 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 2815729 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 5978451 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 7835689 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 9369681 8617199 ~ 8620195 (+) True G127134
TU162207 other downstream 11123 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 533956 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 543214 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 876454 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 1031367 19043304 ~ 19142145 (+) True G129594

Expression Profile