RNA id: AMCG00001183



Basic Information


Item Value
RNA id AMCG00001183
length 600
RNA type mRNA
GC content 0.62
exon number 2
gene id AMCG00001183
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 18012458 ~ 18024201 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTCAGTAGAGGTGAATTCGGATTAGAGTCCATTCTCTCAGTGTGGACACGTGTTTGGGTGAGCTCCTTGCGGGGCGTCACCCTGGTTCGCCGCGACAGACCGCATTGGCTGGTACCGAGGGAGCCCCCGCCCCCAATGAAGACCCTCCTGGAGGCCCCGCCCACACGCAGGTGTGCAGGCAGTGGCGAGCCGGAGAGGACGTTATTTTCCCCCGTCTTAAACGACGCGGGGGTGGAGGTCTCCTCTGGTCCGGTCCGGTCCGGTCCCGGGATTGATGCCATGACCGCCTCGGGAGGCCAGCGGGTGCCCAAGAGTGACAAGCTGGACGAGGCGCAGGCGCTGGCCAAGAGCTGCGCCGGGAGACCCGACTTCCTGCCCTGCGACGGGCTCTCCATCTGCGCCACCCACAGCCACGGAAAGTGCTTCAAACTGCACTGGTGCTGCCATCTGGGCTGGTGCCACTGTGAGTATGCATCCTTCCTGGCGAAATGTCAATCAAAAGGGAATGCAGGAGAAGCAAAGACCCAGATTGTGTCGGGAATCCACCACTCAACACATGCCCTCCTGCGGGACAGCCACTCACAGTGCATGCCatga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU162181 lncRNA upstream 35522 17972009 ~ 17976936 (+) True G129343
TU162082 lncRNA upstream 319932 17691507 ~ 17692526 (+) True G129255
TU162040 lncRNA upstream 461667 17487392 ~ 17550791 (+) True G129221
TU161853 lncRNA upstream 865389 17144190 ~ 17147069 (+) True G129080
TU161844 lncRNA upstream 1120097 16889638 ~ 16892361 (+) True G129071
TU162309 lncRNA downstream 530950 18555151 ~ 18557104 (+) True G129442
TU162310 lncRNA downstream 530950 18555151 ~ 18557104 (+) False G129442
TU162442 lncRNA downstream 772649 18796850 ~ 18802040 (+) True G129552
TU162443 lncRNA downstream 772649 18796850 ~ 18802040 (+) False G129552
TU162512 lncRNA downstream 1063947 19088148 ~ 19090238 (+) True G129597
AMCG00001181 mRNA upstream 521 17989876 ~ 18011937 (+) True AMCG00001181
AMCG00001177 mRNA upstream 41225 17951597 ~ 17971233 (+) True AMCG00001177
AMCG00001180 mRNA upstream 109952 17901050 ~ 17902506 (+) True AMCG00001180
AMCG00001178 mRNA upstream 115055 17890483 ~ 17897403 (+) True AMCG00001178
AMCG00001173 mRNA upstream 132069 17872517 ~ 17880389 (+) True AMCG00001173
AMCG00001182 mRNA downstream 18161 18042362 ~ 18044599 (+) True AMCG00001182
AMCG00001184 mRNA downstream 213730 18237931 ~ 18252467 (+) True AMCG00001184
AMCG00001186 mRNA downstream 242875 18267076 ~ 18300206 (+) True AMCG00001186
AMCG00001191 mRNA downstream 300405 18324606 ~ 18347058 (+) True AMCG00001191
AMCG00001190 mRNA downstream 350298 18374499 ~ 18411054 (+) True AMCG00001190
TU161504 other upstream 2591578 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 2838311 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 6001033 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 7858271 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 9392263 8617199 ~ 8620195 (+) True G127134
TU162326 other downstream 521692 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 530950 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 864190 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 1019103 19043304 ~ 19142145 (+) True G129594
TU162623 other downstream 1461937 19486138 ~ 19489600 (+) True AMCG00001223

Expression Profile