RNA id: TU162357


Basic Information

Item Value
RNA id TU162357
length 499
RNA type TUCP
GC content 0.47
exon number 4
gene id AMCG00001196
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 18555235 ~ 18558217 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAAAGCGCGACTGCGCAGTGGGTACTTCCCTCTTTTGGACCCAAACCTCTTCCAATAATGGCCAAGCGCACCAAGAAGGTTGGGATTGTCGGGAAGTACGGTACCCGTTATGGTGCCTCGCTCAGGAAGATGGTGAAGAAGATTGAAATCACCCAGCACGCCAAGTACACCTGCTCCTTCTGTGGCAAGACCAAGATGAAGAGAAAGGCTGTTGGCATCTGGAACTGTGGGTCCTGCATGAAGACTGTTGCTGGAGGCGCTTGGACATACAACACAACGTCTGCAGTTACAGTCAAGTCTGCCATCAGAAGACTGAAGGAGCTGAAGGACCAGTAAACTTCTGTGATCCTCTCTTCAAAAAGCAACTTGTTCTGTACAGTTTCCTTGGGATTTCACTGACATGGACTCTAAGCCGTGTATCTTGGCTAAAACACCATCCAATAAAAGGAGTTGTAAAGTGTCACttttctgtgatttttgttttttgtcttaaaCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162338 lncRNA downstream 74874 18477617 ~ 18480956 (-) True G129465
TU162305 lncRNA downstream 140720 18413485 ~ 18415110 (-) True G129440
TU162303 lncRNA downstream 142397 18412854 ~ 18413433 (-) True G129438
TU162302 lncRNA downstream 143080 18410106 ~ 18412750 (-) True G129437
TU162247 lncRNA downstream 290558 18240456 ~ 18265272 (-) True G129394
TU162463 lncRNA upstream 331727 18889944 ~ 18890146 (-) True G129567
TU162475 lncRNA upstream 342294 18900511 ~ 18903646 (-) True G129571
TU162477 lncRNA upstream 348927 18907144 ~ 18907641 (-) True G129573
TU162502 lncRNA upstream 480950 19039167 ~ 19041958 (-) True G129593
TU162540 lncRNA upstream 518533 19076750 ~ 19083163 (-) True G129621
AMCG00001198 mRNA downstream 2228 18548558 ~ 18553602 (-) True AMCG00001198
AMCG00001192 mRNA downstream 8031 18538995 ~ 18547799 (-) True AMCG00001192
AMCG00001193 mRNA downstream 23141 18524733 ~ 18532689 (-) True AMCG00001193
AMCG00001194 mRNA downstream 38294 18507549 ~ 18517536 (-) True AMCG00001194
AMCG00001187 mRNA downstream 236897 18300833 ~ 18318933 (-) True AMCG00001187
AMCG00001199 mRNA upstream 6541 18564758 ~ 18588835 (-) True AMCG00001199
AMCG00001197 mRNA upstream 32440 18590657 ~ 18608629 (-) True AMCG00001197
AMCG00001201 mRNA upstream 84040 18642257 ~ 18716366 (-) True AMCG00001201
AMCG00001200 mRNA upstream 170047 18728264 ~ 18764768 (-) True AMCG00001200
AMCG00001205 mRNA upstream 228200 18786417 ~ 18789457 (-) True AMCG00001205
TU162350 other downstream 30287 18524892 ~ 18525543 (-) False AMCG00001193
TU161965 other downstream 1382153 17172870 ~ 17173677 (-) False AMCG00001156
TU161636 other downstream 2646704 15560345 ~ 15909126 (-) False AMCG00001127
TU161519 other downstream 3122361 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 3375508 15179241 ~ 15180322 (-) True G128741
TU162458 other upstream 330548 18888765 ~ 18889757 (-) True G129566
TU162897 other upstream 2689444 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 3052090 21610307 ~ 21648508 (-) False AMCG00001264
TU162984 other upstream 3230991 21789208 ~ 21822820 (-) True G130004
TU163107 other upstream 3701226 22259443 ~ 22302448 (-) True AMCG00001270

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2445076 True 454 TUCP 0.54 4 NC_048592.1 42378193 ~ 42385425 (+)
striped catfish (Pangasianodon hypophthalmus) TU209855 False 493 TUCP 0.48 4 NC_047605.1 7267884 ~ 7271320 (+)