RNA id: AMCG00001202


Basic Information

Item Value
RNA id AMCG00001202
length 1737
RNA type mRNA
GC content 0.52
exon number 11
gene id AMCG00001202
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 18891932 ~ 18907617 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGCCGCTCAGCATCACAGCCGTCAGCACAGGACATCCCATTTCGAGGCACGTAGTATGAGAAAAGAGCTTTGCCACTTTGCCATGGCTGATCTACAGTTATCACTAACGATCAATCACATTGCAGAGGAGCTCAACTCAGATGagtgtaaaatgttattatatttgtgttccGACATGGAAAGCTCCATTGAGGATGTGAAGGATATGTTAAAAAGTCTGATGAAAAGAGGAGAGGTGGATCAAATCTTTTTGTTGGAACTCATGTACAGAATCAAGCGCTTTGACCTTCTGAAAAAGGTGTTCAGGTCAACTAAGAAGGAAGTGGAAGGAATTCTGGGacataaatgtgttgtttctgaATACAGAGTCTTGATGGCAGATGTAAGTGAAGACCTAGACAATGACGATTTACATGCTCTGATATTTCTGCTGAGCGACTCGCTGCCAAGAGGGAGGCTGGACAAAGCGAAGAGTTTCATCGATATCATCATTGAACTGGAGAAGCAGGACAAGGTCTCCCATGAGAAGGTGGACTTGATAGAGCAGTGTCTACGGAGCATCCGCAGAGTAGACCTGGCCAAGAGGGTCCACATGTACCAGAGGAAGGAGGCGTCCAGCACTCCATCTCTCACTCAGCGCATGTGGCAGCAGCCGTCCGCAGCTCTGGCTCCAGAGAACATAAAAATTGCAGTGCCTGAAACAGGGATGCAGTACTGTCAGAACACTGAAGATGTGTACAGGATGCAGACCATTCCTCGGGGCATTTGTCTGATCATCGACTGCATTGGCTTTGACGGAGATATGCTTCAACAGACCTTCCAGAGACTGCAATTCAAAGTTATCCTGTATAAATGGCTGAACCTGGCAGATGCCCTGTCCATCTTGAACGAGACGTCCAGGATGACCGAGTTCCAGTATATCGACTGCTTCGTGTGCTGTATCATAAGTCGTGGCACCTCCAACGCCATGCTGGCCACGGAGTGCGAAGGCCCGGGGCTGAAATACGACGCCATCAAGCATCTGTTCACAGCCGACCACTGCCCTGGCCTGCTGGGCAAACCCAAGCTGTTCTTCATTCAGAACTACTGCCGCAATGCTGACGTGGAGGCAGACGCGCCCTCCCGAGCGTGCAGCATGGAGTCGATCCCACACGAGGCGGACATTTTCTGGAGCTACTGCAAAACGGAGGCTGCTCACCTGGAGAAAACCCAGCACCAGTCCATCTATTGCAACACACTCTCCGCCGGGTTGATGAAGGGACAGAGAAGGAAAATGTGTCTAACTGACGTGCACACAGATGTGAACGGCATCATGTACGAACACAACCGGAAGAATCCGAAGCAGGTGTACTATGTGAGCCTACAACACACACTAAGGAAGAACCTCGTCATAGCgGGGAACCTGCTGTATCCCCCGTCAAGCATGAAACTcgccaaaacaagaaaaggggGAAAGAGGACGCCTGGCATCGAGAACAGCCGGAGGAGAGTAGCTCATGCATGCCTGGCTTGTCCAGATGATCAGCCCGTTGAGCACGCCCACCATTCccagggctgctgctgctgctgctgcaatgGCGGCGCTGTGAAGGGAAGCTGGAAGAAGGTGGCTCGACTTGAAAGACTTTTCCCAGTCTCTGCAAGCAGCCAGGAAGCCGAGGACGTGCCGACAGCCAGCGAGAGCCCCGGCGTGTCGCAACCCGGCCAGTCAGCGCTCAGACCCCGGCGgatg

Function

GO: NA

KEGG:

id description
K04724 CFLAR, FLIP; CASP8 and FADD-like apoptosis regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162442 lncRNA upstream 89892 18796850 ~ 18802040 (+) True G129552
TU162443 lncRNA upstream 89892 18796850 ~ 18802040 (+) False G129552
TU162309 lncRNA upstream 334828 18555151 ~ 18557104 (+) True G129442
TU162310 lncRNA upstream 334828 18555151 ~ 18557104 (+) False G129442
TU162181 lncRNA upstream 914996 17972009 ~ 17976936 (+) True G129343
TU162512 lncRNA downstream 180531 19088148 ~ 19090238 (+) True G129597
TU162526 lncRNA downstream 198095 19105712 ~ 19108737 (+) True G129609
TU162505 lncRNA downstream 232242 19139859 ~ 19142145 (+) False G129594
TU162613 lncRNA downstream 465406 19373023 ~ 19377913 (+) True G129674
TU162629 lncRNA downstream 729985 19637602 ~ 19653509 (+) True G129689
AMCG00001203 mRNA upstream 2210 18888284 ~ 18889722 (+) True AMCG00001203
AMCG00001195 mRNA upstream 107689 18779934 ~ 18784243 (+) True AMCG00001195
AMCG00001189 mRNA upstream 386802 18499105 ~ 18505130 (+) True AMCG00001189
AMCG00001188 mRNA upstream 397331 18462098 ~ 18494601 (+) True AMCG00001188
AMCG00001190 mRNA upstream 480878 18374499 ~ 18411054 (+) True AMCG00001190
AMCG00001207 mRNA downstream 74663 18982280 ~ 19039418 (+) True AMCG00001207
AMCG00001212 mRNA downstream 186540 19094157 ~ 19094534 (+) True AMCG00001212
AMCG00001210 mRNA downstream 216445 19124062 ~ 19130277 (+) True AMCG00001210
AMCG00001209 mRNA downstream 225418 19133035 ~ 19138617 (+) True AMCG00001209
AMCG00001221 mRNA downstream 254024 19161641 ~ 19186416 (+) True AMCG00001221
TU162456 other upstream 2208 18888391 ~ 18889724 (+) False AMCG00001203
TU162312 other upstream 333758 18555151 ~ 18558174 (+) False G129442
TU162326 other upstream 344017 18545893 ~ 18547915 (+) True G129453
TU162207 other upstream 847681 18023060 ~ 18044251 (+) True G129365
TU161504 other upstream 3471052 15409112 ~ 15420880 (+) False G128823
TU162506 other downstream 135687 19043304 ~ 19142145 (+) True G129594
TU162623 other downstream 578521 19486138 ~ 19489600 (+) True AMCG00001223
TU162705 other downstream 1703655 20611272 ~ 20676857 (+) True AMCG00001236
TU162792 other downstream 2010941 20918558 ~ 20925240 (+) True AMCG00001241
TU162800 other downstream 2034455 20942072 ~ 20942397 (+) True G129843

Expression Profile