RNA id: AMCG00001205


Basic Information

Item Value
RNA id AMCG00001205
length 912
RNA type mRNA
GC content 0.52
exon number 7
gene id AMCG00001205
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 18786417 ~ 18789457 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTAGGAATATTGTGAGATGTCTGTTGAATGAACACATGTGGAGTGAAGTGTCTGGTCTTGACAGGCTGGGCTTCAGTATTGTGCTGTATGGCCTGGGCTCCAAGAGGGCTTTGCTGGAGAGCTTTCGCACCTCCATGCTGATGGACTCCCTTCACCTCGTCATCAATGGCTTCTTTCCCAGCATCACCATCAAATCGATTCTGAATGCCATCACTGCGGAAATGCTGGAGCACCAGGGCAGCTTCCGCACGCCGCTGGATCAGATCGACTTCATTGTCAAAGCCCTGAAGAAAGACCCTGATTTGCACATCTACCTGATCATCCACAACATCGATGGGGCCATGCTGAGAGGGGAGAAGTCTCAACAGACTCTGGGGCAGCTGGCAGCCATTCCTAACCTGCACCTCCTCGCATCCATCGACCACATCAATGCCCCCCTCATATGGGACCAGTCCAAATTGAGTCAGTTCAACTGGCTTTGGTATGAGACCACCACCTACCTGCCGTACATCGAGGAGACCTCCTATGAGAATTCTCTCCTTGTGCAGCAGTCGGGAGCGCTGGCCCTCAGCTCTCTGACTCACGTCATGCGCAGTCTGACACCCAATGCCAGAGGGATCTTCAGGCTGTTGGCAGAGTTTCAGCTGGAGAACAAAGACAACCCCTCTTACACAGATTCATCATCTTCACTGAATTACTTGTTTATAGGGCTGTCTTTCCAAGACTTCTACCAGCGCTGTCGTGAGGCATTCCTGGTGAACAGTGAAATCACTCTGAGGACGCAGCTGACAGAGTTCAGGGACCACAAGCTCATCAGAACCAAAAAGGGCGCAGATGGGGTGGAATACCTGCTCGTTCCTGTCGATGCCGGCACTCTGACTGACTTCCTGGAGAAGGACACCGAGTGA

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0000808 origin recognition complex cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K02604 ORC2; origin recognition complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162338 lncRNA downstream 305461 18477617 ~ 18480956 (-) True G129465
TU162305 lncRNA downstream 371307 18413485 ~ 18415110 (-) True G129440
TU162303 lncRNA downstream 372984 18412854 ~ 18413433 (-) True G129438
TU162302 lncRNA downstream 373667 18410106 ~ 18412750 (-) True G129437
TU162247 lncRNA downstream 521145 18240456 ~ 18265272 (-) True G129394
TU162463 lncRNA upstream 100487 18889944 ~ 18890146 (-) True G129567
TU162475 lncRNA upstream 111054 18900511 ~ 18903646 (-) True G129571
TU162477 lncRNA upstream 117687 18907144 ~ 18907641 (-) True G129573
TU162502 lncRNA upstream 249710 19039167 ~ 19041958 (-) True G129593
TU162540 lncRNA upstream 287293 19076750 ~ 19083163 (-) True G129621
AMCG00001200 mRNA downstream 21649 18728264 ~ 18764768 (-) True AMCG00001200
AMCG00001201 mRNA downstream 70051 18642257 ~ 18716366 (-) True AMCG00001201
AMCG00001197 mRNA downstream 177788 18590657 ~ 18608629 (-) True AMCG00001197
AMCG00001199 mRNA downstream 197582 18564758 ~ 18588835 (-) True AMCG00001199
AMCG00001196 mRNA downstream 228266 18555235 ~ 18558151 (-) True AMCG00001196
AMCG00001206 mRNA upstream 2057 18791514 ~ 18793991 (-) True AMCG00001206
AMCG00001204 mRNA upstream 15250 18804707 ~ 18840390 (-) True AMCG00001204
AMCG00001208 mRNA upstream 254500 19043957 ~ 19066500 (-) True AMCG00001208
AMCG00001211 mRNA upstream 310831 19100288 ~ 19105711 (-) True AMCG00001211
AMCG00001213 mRNA upstream 318097 19107554 ~ 19121606 (-) True AMCG00001213
TU162357 other downstream 228200 18555830 ~ 18558217 (-) False AMCG00001196
TU162350 other downstream 260874 18524892 ~ 18525543 (-) False AMCG00001193
TU161965 other downstream 1612740 17172870 ~ 17173677 (-) False AMCG00001156
TU161636 other downstream 2877291 15560345 ~ 15909126 (-) False AMCG00001127
TU161519 other downstream 3352948 15364067 ~ 15433469 (-) True AMCG00001118
TU162458 other upstream 99308 18888765 ~ 18889757 (-) True G129566
TU162897 other upstream 2458204 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 2820850 21610307 ~ 21648508 (-) False AMCG00001264
TU162984 other upstream 2999751 21789208 ~ 21822820 (-) True G130004
TU163107 other upstream 3469986 22259443 ~ 22302448 (-) True AMCG00001270

Expression Profile