RNA id: AMCG00001210


Basic Information

Item Value
RNA id AMCG00001210
length 1389
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00001210
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 19124062 ~ 19130277 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtatcttgcaGCTCCAGGGGTGAAGATGAAGTCCATTGTTCAAGCAACCCTCTTCGTCTTGGTTTGCGTTGGGACCTACTACGTGTACCTTGCGTTTCAAGCCCCCAAAGACACACTTTCTGTGACAAAGCTCAGGCAGCATCAAACTGGCAAGAAACCTCCAAAGAGAAGCTCTCATCCACCAAAAGACATCCCTCCACCACAATCAGACATCCTTCAGAAGCCAAAAGATGTCCCCAAACCTCCAAAGGACACACCTGACCTACTCAAGGACATTCCTGACCTGCCCAAAGACAAACCTGACCTACTAAAGGACATCCCTGACCTGCCCAAAGACAAGCCTGACCTACACAAGGACATTCCTGACCTGCCCAAAGACAAGCCTGACCTACCTAAAGTCACGCCTCCCCCACCAATCACTGTTCAGTCGCCCTCACTCTCCAGAGGGTGGGGTGATGAAATTCATTGGATAGAAACATATAATGAAGCTTTGTTAAAAGCCAAATCCAGcCAAAAGCCACTTATGGTGATTCATCACTTAGAACAATGCCCCGTCTGCAAAAAATTAAAAGCAGTCTTTTCTACCAATGAAGCCATCCAGAAAATGGCAAAGGAGAACTTCATCATGTTCAATATCATGAACGAGACCGGAGACAAGAATCTTGCTCCCGATGtGCTGGAAAACATGCAGAAAGCAAAACTGTTCCTCAACACCGAGCTCTAACAAGTACCTCTCCCATTCTGGATCTGCCACGTCAAAAGTCAACTATGTTTCTATAAAATGCATGGCATTTTCTGTCTGTGGGCCACACCCATTCATTCCATTCTTTCCATTGGATTATTGTTCTTTCACTGTGACTTTTTATGAATTATAAGAATGTCATGTAACAGGATTCAACTAAGTCCCCGTAACATTTCCCCACAAATAGTTACACATGTTTCTATTTCCCATGGCGTGTCAGACTTGAAAGTACCTATTATCTGGAACTAACATTAGTATAGGCTTCCCTGGCTTTCAGACAGAAAGAGTACAATGAAGTGCTGAGTGGAGATGGAAGAGATGTAAATGTATTCCACTTTACTAAATGTGGATGATAATTTGAACATGGTATATATGCTAAAGAAGCAATGTTTGGAGGTTGTTGAATCCCCGACCTTCCAACACTTTGGCACATCCAGcttctttattaattaattaatcattcaacaaaatgaaacaataaccTCAAGTTGTGTCAAACCCTGTAGTAAAATTAATTAGAAGAGGACAGGACAACCTCTGCTAGATTTCTCATGCTCATTACCTTAAGaaacttgaaaataattaacaaaactcTGCTTCCCCCCCACTTAGATcagataaattatatatatatatatatatata

Function

GO: NA

KEGG:

id description
ko00513 Various types of N-glycan biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162526 lncRNA upstream 15325 19105712 ~ 19108737 (+) True G129609
TU162512 lncRNA upstream 33824 19088148 ~ 19090238 (+) True G129597
TU162442 lncRNA upstream 322022 18796850 ~ 18802040 (+) True G129552
TU162443 lncRNA upstream 322022 18796850 ~ 18802040 (+) False G129552
TU162309 lncRNA upstream 566958 18555151 ~ 18557104 (+) True G129442
TU162505 lncRNA downstream 9582 19139859 ~ 19142145 (+) False G129594
TU162613 lncRNA downstream 242746 19373023 ~ 19377913 (+) True G129674
TU162629 lncRNA downstream 507325 19637602 ~ 19653509 (+) True G129689
TU162635 lncRNA downstream 650973 19781250 ~ 19781607 (+) True G129695
TU162636 lncRNA downstream 651370 19781647 ~ 19781862 (+) True G129696
AMCG00001212 mRNA upstream 29528 19094157 ~ 19094534 (+) True AMCG00001212
AMCG00001207 mRNA upstream 84644 18982280 ~ 19039418 (+) True AMCG00001207
AMCG00001202 mRNA upstream 216445 18891932 ~ 18907617 (+) True AMCG00001202
AMCG00001203 mRNA upstream 234340 18888284 ~ 18889722 (+) True AMCG00001203
AMCG00001195 mRNA upstream 339819 18779934 ~ 18784243 (+) True AMCG00001195
AMCG00001209 mRNA downstream 2758 19133035 ~ 19138617 (+) True AMCG00001209
AMCG00001221 mRNA downstream 31364 19161641 ~ 19186416 (+) True AMCG00001221
AMCG00001220 mRNA downstream 59774 19190051 ~ 19192097 (+) True AMCG00001220
AMCG00001219 mRNA downstream 100786 19231063 ~ 19243511 (+) True AMCG00001219
AMCG00001223 mRNA downstream 347983 19478260 ~ 19492344 (+) False AMCG00001223
TU162456 other upstream 234338 18888391 ~ 18889724 (+) False AMCG00001203
TU162312 other upstream 565888 18555151 ~ 18558174 (+) False G129442
TU162326 other upstream 576147 18545893 ~ 18547915 (+) True G129453
TU162207 other upstream 1079811 18023060 ~ 18044251 (+) True G129365
TU161504 other upstream 3703182 15409112 ~ 15420880 (+) False G128823
TU162623 other downstream 355861 19486138 ~ 19489600 (+) True AMCG00001223
TU162705 other downstream 1480995 20611272 ~ 20676857 (+) True AMCG00001236
TU162792 other downstream 1788281 20918558 ~ 20925240 (+) True AMCG00001241
TU162800 other downstream 1811795 20942072 ~ 20942397 (+) True G129843
TU162840 other downstream 1946858 21077135 ~ 21078870 (+) True G129877

Expression Profile