RNA id: AMCG00001213


Basic Information

Item Value
RNA id AMCG00001213
length 3388
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00001213
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 19107554 ~ 19121606 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTAaactttttaaagcattttttattttgtgtatgccTCTCTCTGAATTGGAAAACTGCTTCAGACGGCTGCACTCTACTGCCgtaatgtttgtttaaagcTGTTGTTTGAGGAATTTCTGCACTGAACAAGATGGCTGTTACATGGAGACAAGGAGAGGGATTTCTGCTGGTGTTTATGCTCTCTCTAGGTCTCTGCTCTTTCCATTCAGTGGGGGCTGGAAAGCTACTGGTGATGCCTATGGACGGAAGCCACTGGACCTCGATGAAGGCTGTGGCTGAGGAGCTGGGCAGGAAAGGACACACAGTGATGGTGGTCATACCAGAAGTGAGCTTACGACTGGGTCCTAGCAGCCACTGCACCACCAAGACGTATGCTGTCCCCTACACCAAAGACTACCTACAGAGCCTCCAGGGGGGTCAGAGTGCAAATCTTTTTAGCAGCAAGCCCCTGTTGGAACGAGTGCCCCTGGTGGTGGAGAGGGCAAAGAACATCTCAAGTTTGTTGAGGACGACGTGTGTAAGCCTCCTACAAAACCAAGAGCTCATGCGTTACCTGAAAGAGCAGGACTTTGATGGCGTTCTAACCGACCCTATAGTGCCCACCGGAGCCATTGTGGCGGAGTACCTCTCGGTTCCCTCTGTCTACCTGCTGCGAGGGATTCCCTGCGGCTTGGAATTCACTGCCATGGCCTGCCCCAACCCCCCCTCTTACGTGCCACGGTTTTTCACCAGGAACACTGACCAGATGACTTTTGCAAAACGCGGGATGAACTTCCTGGTCAGTCTCCTGGAACCAGTGTTCTGTAAACTGCTGTACTACTCATATGATGACATCGCTTCGAAGTTGCTCCACAGAGAAGTCACTGTGGCGGACATCATGAGCCGGGCCTCGGTGTGGCTCCTGAGGTTTGACTTTGCTTTCGAATTTCCCAGGCCGCTGATGCCCAACATGGTTCTGATAGGAGGAATCAACTGCGCTGTGAGGAAATCACTCCCACCGAGAGATGTCACTGTGGCAGAAATCATGAGCCGGGCCTCGGTGTGGCTCATGAGGATTGACTTTGCTTTTGACTTTCCCAGGCCACTGATGCCCAACATAGTTCTAATAGGAGGAATCAACTGTGCTGTGCGGAAATCCCTCCCATTGCTCTGGTTTCCTGTAGCAGGGTTGCTTGCCTGGctctgtctcagtgtgctgGGGCCCACGGATGGGGGCAAGCTGTTGATCATGCCAGTGGAAGGGAGTCACTGGCTCAGCCTGAAGGTGCTGGTGAATGAGCTGGCACAAAGGGGACACGAGGTGGTCGTCCTGGTGCCAGAGACGAACATACTCATCAAGGGCTCGGACGCCTACAAGACAGAGACCTTCTCCGTGCCGTTCAGCAAGGAGCAGCTGGAGCAGAACATTGCCGGCTTGATACAGGGGCTATTCGGCAAGGGCCCGCCAAAGGACAATGGGATTATGGCTAACCTCAGGAGGCTTATTAACTTCACTAATATGCAAGTGAAAGGGTGCGAGAGTCTCCTGTACAACGAGGGACTGATGCAGCATCTCAAGGAGGAGAAGTTCGACCTCATGCTCACTGACCCCTTCCTGCCCTGCGGATCCATCATCGCCAGGGCCTTCTCCCTGCCCACCGTGTACTTCTTGAGGGGCATCCCCTGTGGGCTGAACTATGAGGCCGCCCAGTGCCCCATGCCGCCATCTTATGTGCCCCGCTTCTTCACGGGCAGCACAGACCGCATGACCTTCCCCCAGCGAGAGGTGGAGAAGTTTGTGAACAGCTCTGGAGAGCATGGCTTTGTGGTCTTCACAATGGGCTCGATGGTGTCCGAGATGCCACTGGAGAAAGCCACCCAATTCGTTGATGCCTTCAGGAGGATCCCCCAGAAGGTTCTGTGGAGGTACACTGGACCCACACCAGACAACCTTCCGGACAATCTCAAGCTAATGAAATGGCTGCCACAGAATGATCTCTTGGGCCATCCAAAGGTCAAGGCTTTCATCACTCACGGAGGCACCCATGGCATCTATGAGGGCATCTGTAATGGAGTTCCCATGGTGATGTTGCCCCTGTTTGGGGACCAACCTGATAACGTCCACCGCATGGTCACTCGGAAGGTCGGCGTTTCCCTCAACATCCAAGAAATGACCTCCAACACCCTGCTGGAGGCAGTCAACACAGTCATTCATGACAAAAGCTACAAAGAGAACATGATGAAGCTTTCAGCAGTGCACAAGGACCGGCCTGTGGAGCCGCTGGACCTGGCTGTTTTTTGGACAGAGTTTGTCATGAGGCACAAGGGGGCAGAGCACTTGAGACCAGCTGCCCATGACCTAAACTGGATCCAGTACCACAGCTTGGATGTCATTGGACTGCTAGTTGCTGTGGTGATCATATCTTCTGCCATGATGGTGAAATGTTGCACATTCTGCTTCAAGAAATGCTGCCGTAGCAGTACGTCTTTGAAAAAAAAGGCGGACTGAACAGACTGAAAAAGGAGCAACACaaggcaagaaaataaaaatacaacagaacaTACAACATTCAATACCCTGTATAGTTAGATGGTCAACTTCAATGTGGCCATCCCTTTTTACAGGAGGAAAAACCAACTGCATCTTAATCGACAGGGATTTTCTGAAAGTAACATTGTAGCTCTACCTCTTTTAACTTACTAATCATTGAGCATTAAGTTCAATGAGCAACACATCACTGATGTTGCAGTCTTATGGCTGATGAAGAAACCAACACTGGTCCAATGTAGTGAGGTTGTGTGAGGCAGAACAAAACTATGAATGAAGCAACAACAAAGCAGTTGTGTAATATAAAATGGAGGAGTGGGGGTTCCTCCCTCCCCGTGCCCTACCTCACAACTTCCTGTTAGTGTTGGTCAAATTTTAGGTCAAGGCAGAAATGTGCTAGAAAATGGCCAGTTCTGTCCCCATTTAAATGTTACCTTCAGAGTAACGGacacattaataacaataaataacatttttggttcctttttttttaactacaatGCAGTTGAATGGATTAATCTGGATACTATTATACTGCATCTCAGCCTAACACACTATTGTGCCTTTgctgtattacatttcaatatgtattttttttctttaaaccacTCATGGTAggactgaaattaataatttttgtgtgtattttaacattgattAATCAGCCTGTATAATCAAAGAGTCTCCGTATGGCAATGTTTTCattcaaactttatttttctaggATATGATTTCAAATTTGATTATACTATGATTGGTGTACTTATTGACCGTTGTTTTGAAACCAACAATTATCAGGAATgcaattgaatgttttttaaaaaataaactaataaatgaatgaataaatgaataga

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K00699 UGT; glucuronosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162540 lncRNA downstream 24391 19076750 ~ 19083163 (-) True G129621
TU162502 lncRNA downstream 65596 19039167 ~ 19041958 (-) True G129593
TU162477 lncRNA downstream 199913 18907144 ~ 18907641 (-) True G129573
TU162475 lncRNA downstream 203908 18900511 ~ 18903646 (-) True G129571
TU162463 lncRNA downstream 217408 18889944 ~ 18890146 (-) True G129567
TU162648 lncRNA upstream 816055 19937661 ~ 19937894 (-) True G129707
TU162656 lncRNA upstream 897091 20018697 ~ 20018965 (-) True G129712
TU162666 lncRNA upstream 1301034 20422640 ~ 20422862 (-) True G129722
TU162680 lncRNA upstream 1396838 20518444 ~ 20518930 (-) True G129736
TU162701 lncRNA upstream 1474759 20596365 ~ 20596744 (-) True G129757
AMCG00001211 mRNA downstream 1843 19100288 ~ 19105711 (-) True AMCG00001211
AMCG00001208 mRNA downstream 41054 19043957 ~ 19066500 (-) True AMCG00001208
AMCG00001204 mRNA downstream 267164 18804707 ~ 18840390 (-) True AMCG00001204
AMCG00001206 mRNA downstream 313563 18791514 ~ 18793991 (-) True AMCG00001206
AMCG00001205 mRNA downstream 318097 18786417 ~ 18789457 (-) True AMCG00001205
AMCG00001215 mRNA upstream 19064 19140670 ~ 19151279 (-) True AMCG00001215
AMCG00001214 mRNA upstream 65893 19187499 ~ 19207758 (-) True AMCG00001214
AMCG00001216 mRNA upstream 86636 19208242 ~ 19226425 (-) True AMCG00001216
AMCG00001217 mRNA upstream 106432 19228038 ~ 19228664 (-) True AMCG00001217
AMCG00001218 mRNA upstream 249437 19371043 ~ 19377277 (-) True AMCG00001218
TU162458 other downstream 217797 18888765 ~ 18889757 (-) True G129566
TU162357 other downstream 549337 18555830 ~ 18558217 (-) False AMCG00001196
TU162350 other downstream 582011 18524892 ~ 18525543 (-) False AMCG00001193
TU161965 other downstream 1933877 17172870 ~ 17173677 (-) False AMCG00001156
TU161636 other downstream 3198428 15560345 ~ 15909126 (-) False AMCG00001127
TU162897 other upstream 2126055 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 2488701 21610307 ~ 21648508 (-) False AMCG00001264
TU162984 other upstream 2667602 21789208 ~ 21822820 (-) True G130004
TU163107 other upstream 3137837 22259443 ~ 22302448 (-) True AMCG00001270
TU163259 other upstream 3489880 22611486 ~ 22614286 (-) False G130244

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000036_00495699_00501488.mRNA True 1776 mRNA 0.46 6 CI01000036 495584 ~ 501488 (-)