RNA id: AMCG00001218


Basic Information

Item Value
RNA id AMCG00001218
length 564
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00001218
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 19371043 ~ 19377277 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAACAGTTTCTCCAACATATCCGCTTTCCAGTCCCTCCACATCGTCATGCTGGGCTTGGACTCGGCCGGGAAGACCACCGTGCTGTACCGCCTGAAATTCAACGAGTTCGTCAACACGGTGCCCACCATCGGCTTCAACACGGAGAAGATCAAGCTGAGCAACGGCACCGCCAAGGGCATCAGCTGCCACTTCTGGGACGTGGGGGGCCAGGAGAAGCTGCGCCCCCTCTGGAAGTCCTACAGCCGCTGCACAGATGGCATCATTTACGTGGTGGACTCCGTGGACGTGGACCGGCTGGAGGAGGCCAAGACGGAGCTACACAAAGTCACCAAATTCGCCGAGAACCAGGGCACCCCTCTGCTGGTGATCGCCAACAAACAGGACCTGCCCAAGTCTCTGCCAGTGGCCGACATCGAGAAGCAGCTGGCTCTGCATGAGCTGACCCCGTCCACCACCTACCACGTCCAGCCGGCGTGCGCCATTATTGGGGAAGGACTACACGAGGGCATGGACAAACTGTACGAGATGATCGCCCAGACCCTGAAAGGTGACAggtga

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162540 lncRNA downstream 287880 19076750 ~ 19083163 (-) True G129621
TU162502 lncRNA downstream 329085 19039167 ~ 19041958 (-) True G129593
TU162477 lncRNA downstream 463402 18907144 ~ 18907641 (-) True G129573
TU162475 lncRNA downstream 467397 18900511 ~ 18903646 (-) True G129571
TU162463 lncRNA downstream 480897 18889944 ~ 18890146 (-) True G129567
TU162648 lncRNA upstream 560384 19937661 ~ 19937894 (-) True G129707
TU162656 lncRNA upstream 641420 20018697 ~ 20018965 (-) True G129712
TU162666 lncRNA upstream 1045363 20422640 ~ 20422862 (-) True G129722
TU162680 lncRNA upstream 1141167 20518444 ~ 20518930 (-) True G129736
TU162701 lncRNA upstream 1219088 20596365 ~ 20596744 (-) True G129757
AMCG00001217 mRNA downstream 142379 19228038 ~ 19228664 (-) True AMCG00001217
AMCG00001216 mRNA downstream 144618 19208242 ~ 19226425 (-) True AMCG00001216
AMCG00001214 mRNA downstream 163285 19187499 ~ 19207758 (-) True AMCG00001214
AMCG00001215 mRNA downstream 219764 19140670 ~ 19151279 (-) True AMCG00001215
AMCG00001213 mRNA downstream 249437 19107554 ~ 19121606 (-) True AMCG00001213
AMCG00001222 mRNA upstream 30530 19407807 ~ 19423785 (-) True AMCG00001222
AMCG00001225 mRNA upstream 100190 19477467 ~ 19478435 (-) True AMCG00001225
AMCG00001224 mRNA upstream 114486 19491763 ~ 19492833 (-) True AMCG00001224
AMCG00001233 mRNA upstream 1077336 20454613 ~ 20455818 (-) True AMCG00001233
AMCG00001232 mRNA upstream 1126575 20503852 ~ 20504824 (-) True AMCG00001232
TU162458 other downstream 481286 18888765 ~ 18889757 (-) True G129566
TU162357 other downstream 812826 18555830 ~ 18558217 (-) False AMCG00001196
TU162350 other downstream 845500 18524892 ~ 18525543 (-) False AMCG00001193
TU161965 other downstream 2197366 17172870 ~ 17173677 (-) False AMCG00001156
TU161636 other downstream 3461917 15560345 ~ 15909126 (-) False AMCG00001127
TU162897 other upstream 1870384 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 2233030 21610307 ~ 21648508 (-) False AMCG00001264
TU162984 other upstream 2411931 21789208 ~ 21822820 (-) True G130004
TU163107 other upstream 2882166 22259443 ~ 22302448 (-) True AMCG00001270
TU163259 other upstream 3234209 22611486 ~ 22614286 (-) False G130244

Expression Profile