RNA id: AMCG00001220



Basic Information


Item Value
RNA id AMCG00001220
length 1092
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00001220
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 19190051 ~ 19192097 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCACAGCCATGCAAGACCaagacagtacagtatatacaggGAGGTTTGGAGCCGTACCTGAGATACCTGTCATTTTCACTTCGCCAGGACGGTTCAATGGCACTGAAGACGAAATACGAGGCCACCATGGTCCTCAGCGGAGCAGGGGACGCCCTGGGCTACAATAATGGGAAGTGGGAATTCTGCAAAAATGGTGAGGAGATTCATAAGGAGCTGGCTGACTTGGGCGGCTTGGCAAAAGTCAACATCAAAGACTTCATGGTGAGCGATGACACGGTGATGCACCTGGCCACGGCCGAGGCTCTGGTGGAGGCAGGGAAGAAGCTGGACCACCCAGAGCTATACAGCCTCCTTGCCAGGAAGTACGTGGACTGCATGAACGACATGACTGGGAGAGCCCCAGGTGGCGGATGTGGGGCCGCTATGAGGGCCATGTGCATCGGCCTGCGCTTCCCTCGGCCTGCCCAGCTGCGGGAGCTGGTGGCTGTGAGCGTGGAGAGCGGGAGGATGACCCACCACCACCCCACAGGCTACCTGGGTTCCCTGGCCGCTGCCCTCTTCACCTCCTATGCCATCAATGGCAAGCCGCTGGTGGAGTGGGGCCGGGGGCTCTTGGAGACCTTAGAGATGGCCAAGACTTACGTGGCAGAATCTGGCCATCATGCTGAAGAGAACCTACAGGCCTGGGGTTACTTTGAGAACAAGTGGAGAGCCTACCTCAAAGAAAGAGGAATTCTGGAAGAGGCGAGCGAGGCCCGGTTCCCAGACATGTACGGCGTCAAAGAGAGAGACGCCTTCTACAAATCCCTGAGCTACAGTGGCTGGGCTGGGAGCAGTGGCCACGATGCCCCCATGATAGCCTACGATGGCCTCCTCAGGGCGGGGAGCTCCTGGGGGGCTCTGGCGGAGCACGTATTCTTCCACGGCGGAGACAGCGATTCTACCGCCGTGATCGCCGCAGCCTGCTTTGGGGCCACGTACGGCTATGAAGGGGTCCCCAAAAACAATTACGATCAACTTGAGTATCGGGCGAGGCTGGCCAAGCTGGGGGGACAGTTGTTTGAGCTCAGTCAGAGCAGTAGAAATTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU162505 lncRNA upstream 47906 19139859 ~ 19142145 (+) False G129594
TU162526 lncRNA upstream 81314 19105712 ~ 19108737 (+) True G129609
TU162512 lncRNA upstream 99813 19088148 ~ 19090238 (+) True G129597
TU162442 lncRNA upstream 388011 18796850 ~ 18802040 (+) True G129552
TU162613 lncRNA downstream 180926 19373023 ~ 19377913 (+) True G129674
TU162629 lncRNA downstream 445505 19637602 ~ 19653509 (+) True G129689
TU162635 lncRNA downstream 589153 19781250 ~ 19781607 (+) True G129695
TU162636 lncRNA downstream 589550 19781647 ~ 19781862 (+) True G129696
TU162651 lncRNA downstream 802930 19995027 ~ 20095067 (+) True G129708
AMCG00001221 mRNA upstream 3635 19161641 ~ 19186416 (+) True AMCG00001221
AMCG00001209 mRNA upstream 51434 19133035 ~ 19138617 (+) True AMCG00001209
AMCG00001210 mRNA upstream 59774 19124062 ~ 19130277 (+) True AMCG00001210
AMCG00001212 mRNA upstream 95517 19094157 ~ 19094534 (+) True AMCG00001212
AMCG00001207 mRNA upstream 150633 18982280 ~ 19039418 (+) True AMCG00001207
AMCG00001219 mRNA downstream 38966 19231063 ~ 19243511 (+) True AMCG00001219
AMCG00001223 mRNA downstream 286163 19478260 ~ 19492344 (+) False AMCG00001223
AMCG00001228 mRNA downstream 913958 20106055 ~ 20111585 (+) True AMCG00001228
AMCG00001226 mRNA downstream 939390 20131487 ~ 20151385 (+) True AMCG00001226
AMCG00001227 mRNA downstream 972908 20165005 ~ 20190996 (+) True AMCG00001227
TU162506 other upstream 47906 19043304 ~ 19142145 (+) True G129594
TU162456 other upstream 300327 18888391 ~ 18889724 (+) False AMCG00001203
TU162312 other upstream 631877 18555151 ~ 18558174 (+) False G129442
TU162326 other upstream 642136 18545893 ~ 18547915 (+) True G129453
TU162207 other upstream 1145800 18023060 ~ 18044251 (+) True G129365
TU162623 other downstream 294041 19486138 ~ 19489600 (+) True AMCG00001223
TU162705 other downstream 1419175 20611272 ~ 20676857 (+) True AMCG00001236
TU162792 other downstream 1726461 20918558 ~ 20925240 (+) True AMCG00001241
TU162800 other downstream 1749975 20942072 ~ 20942397 (+) True G129843
TU162840 other downstream 1885038 21077135 ~ 21078870 (+) True G129877

Expression Profile