RNA id: AMCG00001227


Basic Information

Item Value
RNA id AMCG00001227
length 2241
RNA type mRNA
GC content 0.54
exon number 14
gene id AMCG00001227
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 20165005 ~ 20190996 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGTCAGTGTTCTCAGTCCTGGAGTACCTTCTACTGTGACTGCTCTGGTACGGGCTACACTGGGGCAACCTGCCATGACTGTGACGATCTACGAGCCGTCATGTGAAGCCTACAGACAAACGGGAAGCTCTTCTGGATACTTCTCCATTGATTCGGATGGAAGTGGTCCACTGGGGCCGACCCTGGTATATTGCAACATGACAGAGGACAGAGTGTGGACGGTAATTCACCACAACAGCACTGAGCCCACCAGAGTCCAAGGCTCCAGTCTCCAGAAGCCCTACATGATGCAGTTCAACTACAGCACGAGTCCAGAGCAGCTGCTGGCACTGGTCAGTGGGGCCGAGCAGTGTCAGCAGGAGATCGTCTACCGCTGCAGGAAGTCCCGCTTACTCAACACACGGGATGGCACTCCGTTCTCGTGGTGGGTGGGCAGAAGTGGAGAGAGACATACCTATTGGGGAGGCTCCTTGCCGGGGATCCAGCAGTGCTCCTGCAATCTGGAAGAAAACTGCATCGACATGAACTACTTCTGCAACTGTGATGCAGACCGAGAGGAATGGACCAATGACACAGGCCTCCTGTCCTATAAAGATCACTTGCCTGTGAATCAGGTTGTGATCGGAGACACGAGCAGACCTGGATCAGAAGCAATTTACCGAGTGGGACCTCTCCGTTGCTATGGGGACAGGAATTTTTGGAATGCAGCCACTTTTTACGAAGAGTCGTCATACCTTCACTTCCCCACCTTCCATGCCGAGCTCAGCGCCGACATTTCTTTCTACTTCAAGACCACAGCGGATTCAGGCGTTTTCCTGGAGAACCTGGGAATCAAAGACTTCATAAGGGTTGAACTGAGCTCCCCTTCGGTGTTGGCCTTTTCGTTCGACGTGGGGAACGGCCCCATGGAGCTCCTGGTGAAGTCGCCCGTCCCTCTGAATGACAAGCAGTGGCACTACGTTAGGGCAGAGCGCAACATCAAGGAGGCCTCTCTGCAGGTCGACCAGCTGCCCATCAGATTCCACGAGGCTCCGTCTGAAGGGCACTTCCGCCTGCAGCTCAACAGCCAGCTGTTTGTAGGAGGAACAGCGTCCCGACAGAAGGGGTTTCTGGGATGCGTACGGGCTTTGACCTTGAATGGCTTGACCCTTGACTTGGAGGAGAGGGCAAAGATGACCCCAGGGGTCAGTGCCGGCTGCCAGGGTCATTGCAGCAGCTATGGGAGCCACTGCCACAACCGAGGAAAGTGCATTGAGAAGAAGAACGGCTACTCCTGCGACTGCACCCACTCGGCTTACGGAGGACCCTTTTGCAAGAAAGAGGTCTCTGTCTTCTTTGAAGCTGGCTCCTCTGTGACCTACACCTTCCAGGAACCGTTCTCCGTCGTTGGGAATAAGAGCGCTCAGTCTTCTGCCATCTACGCCGAAATAAGCAAGTCCAGAGAAAACATTGCCTTCAGCTTCCTGACGACACATACGCCAGCCATGTTGTTCTCGGTCAGCACGTATTACCAGCAGTACATGGCTATCATCTTAGCCCAAAATGGGAGCTTACAGATCTGGTACCAACTGAACAATGAGAGGAAGCCTGATGTATTCTTCCCTGGAACCACCAACCTGGCAAACGGGCAGCTACACTGGGTTCGAGTCCATCGGGAAGGGAAATACGTATACGTCCAGATTGACCAGGATGTAAACACCAAATATAGCCTATCTTCAGACACTGAGTTGAATGCCATCAAATCTCTAAGTTTGGGCAAAGTCACAGACAGTGCTGGTGTGGATCAGGAGGTGGTGCTGGCCAGACTGAAGGGTTTCCTCGGCTGTCTCTCCTCGGTCCAGTTCAATCAGGTGGCTCCTCTGAAAGTCGCGCTGCTCCGTGGCGGCAGCTCCCTGGTCACGGTGAGGGGGCGCCTTGTGGAGTCCAACTGTGGTGCAGCCAGCATGGCCGACTTAAACACCTACACCACCACGCACTCCCTGTCAGATCATTCAGAGAAAGTCGACAGAGGGAAAGAACCCCTAACCAATGCAATGCAAAGGGTCATCGCAGTCGTGATTTTCATCACACTCTGCATTGTGGGCATCATGACCCGCTTCCTCTACCAGCACAGAAGAGGTCAGCAGACGTCCGCTGTGAAGGACAAGGAGCATTGTCACGGCCTGGAGCCCGCTTATCGAACCGAGCTGGACCTCCAGAACTCAGTCCGTGACAGTAGGAAGGAGTATTTCATCTGA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162651 lncRNA upstream 69938 19995027 ~ 20095067 (+) True G129708
TU162636 lncRNA upstream 383143 19781647 ~ 19781862 (+) True G129696
TU162635 lncRNA upstream 383398 19781250 ~ 19781607 (+) True G129695
TU162629 lncRNA upstream 511496 19637602 ~ 19653509 (+) True G129689
TU162613 lncRNA upstream 787092 19373023 ~ 19377913 (+) True G129674
TU162663 lncRNA downstream 114647 20305643 ~ 20305857 (+) True G129719
TU162668 lncRNA downstream 273367 20464363 ~ 20496345 (+) True AMCG00001229
TU162700 lncRNA downstream 405435 20596431 ~ 20596752 (+) True G129756
TU162870 lncRNA downstream 1050341 21241337 ~ 21241568 (+) True G129904
TU162936 lncRNA downstream 1217938 21408934 ~ 21409691 (+) True G129961
AMCG00001226 mRNA upstream 13620 20131487 ~ 20151385 (+) True AMCG00001226
AMCG00001228 mRNA upstream 53420 20106055 ~ 20111585 (+) True AMCG00001228
AMCG00001223 mRNA upstream 672661 19478260 ~ 19492344 (+) False AMCG00001223
AMCG00001219 mRNA upstream 921494 19231063 ~ 19243511 (+) True AMCG00001219
AMCG00001220 mRNA upstream 972908 19190051 ~ 19192097 (+) True AMCG00001220
AMCG00001229 mRNA downstream 301656 20492652 ~ 20496368 (+) False AMCG00001229
AMCG00001230 mRNA downstream 412079 20603075 ~ 20608903 (+) True AMCG00001230
AMCG00001236 mRNA downstream 433938 20624934 ~ 20628040 (+) False AMCG00001236
AMCG00001234 mRNA downstream 496494 20687490 ~ 20699600 (+) True AMCG00001234
AMCG00001237 mRNA downstream 517291 20708287 ~ 20714482 (+) True AMCG00001237
TU162623 other upstream 675405 19486138 ~ 19489600 (+) True AMCG00001223
TU162506 other upstream 1022860 19043304 ~ 19142145 (+) True G129594
TU162456 other upstream 1275281 18888391 ~ 18889724 (+) False AMCG00001203
TU162312 other upstream 1606831 18555151 ~ 18558174 (+) False G129442
TU162326 other upstream 1617090 18545893 ~ 18547915 (+) True G129453
TU162705 other downstream 420276 20611272 ~ 20676857 (+) True AMCG00001236
TU162792 other downstream 727562 20918558 ~ 20925240 (+) True AMCG00001241
TU162800 other downstream 751076 20942072 ~ 20942397 (+) True G129843
TU162840 other downstream 886139 21077135 ~ 21078870 (+) True G129877
TU162879 other downstream 1080388 21271384 ~ 21276879 (+) True G129913

Expression Profile