RNA id: AMCG00001245


Basic Information

Item Value
RNA id AMCG00001245
length 3721
RNA type mRNA
GC content 0.41
exon number 22
gene id AMCG00001245
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21033058 ~ 21066211 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGGAGCACTGCATGAGTCAATGGAAACAAGTTCAGCAGTTAGAAATAAAGTTTTTGGAGCAAGTGGACTACTTCTATGATGACAACTTTCCAATGGAAATTCGTCAGTTTCTGGCCGTGTGGATTGAAAGTCAGGACTGggACACGGCCTCGAACCATGAGTCGATGGCCACTGTTCTCTTCCACAATCTGTTGACGCAACTGGAAAAACAATGTTCCCAAGAGCAGAATTTCCTGCAGAGGCACAATCTAAAAAGGATAAAACAGCAACTCCAAgtgAAGTATAAAACCAATCCCCTGCACATGGCTGGTGTGATTGCGAACTGCCTGAGAGAAGAGCGGAGGATCATTGCAACAGCCAGCATGCAGGAGCAGGGGCCGCTGGAGAAGTCCATGCAGAACTCTGTGGTGTTTGAAAGACAGAGGAACCTGGATAATAGAGTAGCCGTGATCAGAAGCAGTGTGCAGGAGACACTTTCCAAGATGACTGATCTGATCAAGGAGATTGATTCGCTGATGAACACGCAGCTCAACGCCGAGCTGATGGACTGGAAGCGGCGGCAACAGATCTCCTGTATCGGGGGGCCTCTGCTCACAGGCCTGGACCAGCTACAGAACTGGTTCACCCTCACAGCTCAAAGCTTGTTTCAGATCAGAAGACAGCTGGATAAACTTGAAGAGCTCATCATGAAAGTCACGTATGAAGGAGACCCCATACCACTGCAGAAGCCCCAGCTGGAAGAAAGAGTTAATTTCTTGATCTACCATCTCATTAAAAGCTCCTTTGTGGTCGAGAAGCAGCCCTGTATGCCCACTCACCTTCAGCGGCCTCTCATTATTAAAACCCAGGTGCAGTTCACTACTAAACTCagGTTGTTGGTTAAACTACCAGAAGTGAATTATCAGGTGAAGGTGAAGACAACATTCGACAAggACCTTCCTGCAGGCCGAGTGAATCGTCAGTTCTTCATATTTGGGACCAACACGAAAGTGATGGATGTTGAAGAATCCTCCAATGGATGTCTCTCTGTGGAATTTAGACACTTGCAACTTAAAGAGAGAAAATACGTCAACGGAACAAAGGGGAACGAGGGACCTCTCACAGTCACAGAAGAACTCCATTCCATCACTTTTGAGGCACAGTTCTGTATGCATGGATTAAATATAGACCTGGAGatttgctCACTACCTCTCGTCGTTATATCGAATGTAAGCCAGCTTCCAGGGGGCTGGGCCTCTGTCATTTGGTACAATCTGCTGACAGATGACCCCAGGAACCTGTCTTTTTTCACTAACCCTCCTCCCGCAACCTGGAGCCAGCTGTCTGAAGTCCTGAGTTGGCAGTTTTCGTCATTCGCTGGCCGAGGACTAAATAAAGAGCAGCTTGGCATGCTGGGAGAGAAACTGCTGGGTCAACAAGCTTCCCATAATGAATGCCATGTTTATTGGTCAAAGTTTTGCAAGGAAAATATACCTGGCAAACCATTCAGCTTCTGGCTCTGGTTAGACTCCATTCTGGAGCTCATCAAGAAGCACCTTCTGCCAGTTTGGATTGATGGCTACATCATGGGGTTTGTCAGCAAGGAGACAGAACGTGCCCTACTGAAAGAAAAGGAGCCAGGGACGTTTCTCCTGAGGTTCAGTGAGAGCCACCTAGGAGGAATCACGTTCACGTGGGTGGACCAGGCTGAGAATGgggaagTGATGTTTCACTCTGTGGAGCCGTACACCAAGAGCCGCCTTAGTGCACTACCTTTTGCAGACATCATCAGGGACTACAAAGTGATTGTCGATGGGACTGTCCCAGAAAACCCCCTGAAATTCCTTTACCCGGGCATACCCAAAGACGAAGCATTCGCAAAGCATTACAACAGTCAGCAGAGCAAAGCCTCCCAgtatatttcttcatttttgatCCCAGTCTCCCAGTTTACAAACACTGTCACTGCCCCCGCCTCCTCTATCGAACTACCCATGTCACCTGGGATGTTTGATATCCTGAATCAGTCCCTAAGTCCTTTGGAAATTGAGAGTGCTATGAGCTCGCCCTAAGAGTAAGGCGTAAGGAGAAAGTTTGGTATATCAGAAGAAGAGAAGACCTGTTCTTTTATCAGTTTGCAAAGGTGACACTTTTGACATGTATCTGGCTTGAAGTGCTAACTATGTAAAAGACACTCTTTACTAATTTTCTGTCTGAATGCTTCCAAACTCCTCAATCTGGTGCTGCATTGCAAGGACTTCTTAGAACTAAATACTGTTTCATCCTCCGTTATGCTGTAATTAAAGGTAGTGCACATGTacttgacattaaaaaaaaaacgtattgtCAGCATATATATTTCACTAGTTCACTGGAGATGCCCAAATAGGCTgcataataaattatatgtaaCGTAAATTTtactatacaaataatattttatatagtcTTTGTATACAGTGACAGCCTTAAAGAATCAGACCCCAGACTATGAATGACCCCAGGCTATGAATGTCttactgaaactgaaagaaaaagctGATCTACAAATATGTAAAGGAGAACTGTACTGTTTTCTTTCTGACTCTTCCTCTAAATTTGCACCAATTCACTttgctttatttcctttatGTTCTTTACAAATATGTGTAAGGGAAATCAAACGTTCATAAGTTCTTATCCAGTAAGAATGAATCAACATCTTTCTCAAAATAATTCTGTAGTCATGACTTTTATTTGGCTTTGATAATGTAAATGAACCTGAAAGTAATGATTATAATGTATTCAGGTTGAATGAGATCTCTgactacaaaaaatattttaaaacttcaaGCAATTCTATATGGAATTGCTATACTCCTTGAATGAAGAAggaatttattttacacaagaGTGCATGCAAACTGTGTATTTAATGTCTCTGCAGTGCCTTTTTGTTTAAACTTTGTACACTATTTTTTATCAGTCTTCAGAAATCTGAAAATCTCAGCAGAATGTATATAGTTTCTCTCTcaaataatgtactgtactgttcgtacctgttttttgttttgtttttttatccctGCTTCTACACTGCCTTTTACAGCAGcttatacattttccttttttgatttGAAGAGacttaacatttatttagcatATTTTTGTAACAGAGTTTTATACTTTACTTTTGTTGTACATTAATGTATCTATTAGTAAATTGTATGAGTATGAAATCAGAATATCatggaataatatattttttgtttaatgtctcATTACAAATGCCTTCCAAATGCCATACTATACATAACTGGGTGTGCATAACCAACTCCAGTATTCCTTGACAGTATAGCACCAGTCGGGTGGCGCCCTTTTTAAAGTTTCTATCCTTAAAATTGTACCAAGCAGCCACCAGACAACTCCGAACTGAAGAACAGACATTAAGCAACGAAGAACCTATCTAATCTCCTGCTTGAATGATTAGTGATAAATCATTGTATTCCATTATAATTTATGCTTTTTCAGGATTATTGTTTCTGTGAATTAACAGTGAATTGAACAGCTAGAATGTATTCATCCCAGAGGAAAGTTCCGGTTCCTACAGAGTTCAagtaaatgctttattattttatggttcGCCTACACTGGTGTTTTATGAGTGTTAGGTCAGTGGGATTTtgtaatgtgattttgttttgtttttatctattgggattattttgttcacaaataaaattgttaatttgtttaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K11222 STAT4; signal transducer and activator of transcription 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162801 lncRNA downstream 90609 20942057 ~ 20942449 (-) True G129844
TU162756 lncRNA downstream 187119 20845696 ~ 20845939 (-) True G129807
TU162751 lncRNA downstream 241223 20789741 ~ 20791835 (-) True G129802
TU162701 lncRNA downstream 436314 20596365 ~ 20596744 (-) True G129757
TU162680 lncRNA downstream 514128 20518444 ~ 20518930 (-) True G129736
TU162841 lncRNA upstream 11531 21077742 ~ 21078030 (-) True G129878
TU162896 lncRNA upstream 171263 21237474 ~ 21240024 (-) True G129927
TU162922 lncRNA upstream 267315 21333526 ~ 21333999 (-) True G129951
TU163022 lncRNA upstream 935516 22001727 ~ 22084497 (-) True G130033
TU163046 lncRNA upstream 1012871 22079082 ~ 22082918 (-) True G130055
AMCG00001247 mRNA downstream 11421 21007825 ~ 21021637 (-) True AMCG00001247
AMCG00001242 mRNA downstream 153679 20873626 ~ 20879379 (-) True AMCG00001242
AMCG00001231 mRNA downstream 450784 20568802 ~ 20582274 (-) True AMCG00001231
AMCG00001232 mRNA downstream 528234 20503852 ~ 20504824 (-) True AMCG00001232
AMCG00001233 mRNA downstream 577240 20454613 ~ 20455818 (-) True AMCG00001233
AMCG00001246 mRNA upstream 61807 21128018 ~ 21154409 (-) True AMCG00001246
AMCG00001244 mRNA upstream 100761 21166972 ~ 21177803 (-) True AMCG00001244
AMCG00001251 mRNA upstream 174271 21240482 ~ 21269351 (-) False AMCG00001251
AMCG00001255 mRNA upstream 226109 21292320 ~ 21305020 (-) True AMCG00001255
AMCG00001256 mRNA upstream 354522 21420733 ~ 21427306 (-) True AMCG00001256
TU162458 other downstream 2143301 18888765 ~ 18889757 (-) True G129566
TU162357 other downstream 2474841 18555830 ~ 18558217 (-) False AMCG00001196
TU162350 other downstream 2507515 18524892 ~ 18525543 (-) False AMCG00001193
TU161965 other downstream 3859381 17172870 ~ 17173677 (-) False AMCG00001156
TU161636 other downstream 5123932 15560345 ~ 15909126 (-) False AMCG00001127
TU162897 other upstream 181450 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 544096 21610307 ~ 21648508 (-) False AMCG00001264
TU162984 other upstream 722997 21789208 ~ 21822820 (-) True G130004
TU163107 other upstream 1193232 22259443 ~ 22302448 (-) True AMCG00001270
TU163259 other upstream 1545275 22611486 ~ 22614286 (-) False G130244

Expression Profile