RNA id: AMCG00001255


Basic Information

Item Value
RNA id AMCG00001255
length 1713
RNA type mRNA
GC content 0.57
exon number 11
gene id AMCG00001255
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21292320 ~ 21305020 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGTGTCAGGCAAATTCCGAGCAGGTTTGTCAAACGGGCCTGGGGAACTAAAGGCCCAGAAGAAGCCGGGGGGTCGAGTAGAAGAGGCTTCGAAGGAGAAAAATGAGAGGCAGTTCCTGGAGGATTTAGAGTTAATCTCTGACAGGCTGCAGGAAATCCCCATTAGCGATGTGGTTAAGCTCAAAGTCCCGAGCGCTCAAAAGCCGGGAGAGACGGTGCCTTTCCGCACTCTGCTTTTGAACCGCTGCCAGAAGGAGTTTGAGACGGAGAAGGGTGGAGACGAGGTCTTCGAGAAGAAGCAGAAGTTGCTGGATGCATCCTTGGTGGACGAGGAGTGGCAGCGTCTATGTGACGAGCTGCAGGAGGCCAAGCACAAGGCCCAGCGGCGCGCGCTAGGCAACATCAGGTTCGTTGGGGAGCTGTTCAAGTTGAAGATGCTGACGAGGACCACCATGCACAATTGCATCGTCGAGCTGTTGAAGAACCACGAAGAGTCCCTGGAGTGCCTGTGCCGACTCCTCTCCACTATCGGCAAAGACCTGGACTTGGAGAGGTCCAAGCCCCGTATGGACCAGTACTTCAGCCAGATGGAGCAGATCATCAAAGAGAGGAAGACCTCCTGTCGAATCCGCTTCTTGCTGCAGGACGTCTTGGACCTTAGAAAGGATAACTGGGTGCCCAGGAGGGCTGGCCAGGGTCCGAAGACAATCGACCAGGTCCACAAGGAAGCAGAGCTGGAGGCACACCGTGAGCAGATCAAGGTGCAGCAGCAGCTCTTGATCAAGAAGGACAACCGACTTGGGGGCCCTGGGGGGCCATGTCCTGCAGCTCCCGGGTCTGGACGGGCCGGTTCCGGTGCTCTGAATTGCTGCTCCGCACTGCAGCAGTCGTCCTCCACCGCTCCTTCCTCCGTACGCAGTGATGCATGGAGAGTGCCACTGAGGAGTAGCTTTCGCCGGGATGGCGATGAGTGTAGTAACCTCTTCGAGTGGCCGGAGCATCAGGAGCGCGGCCAGCGCGATCGCTCTGAGAGGAGAGGCGCCGGGGATAAGAGCGGCCTGGACAAGATTGCCTTGAAGAAGTCAATGTCCATCATTGGGGAGTATCTCCAACTCAATGACATGAAGCCCTCAGCAGTGGGTCCCCAACGCTCCCAGCAGGGCAAGAGGAGGGAGCAGCGCAAGGTCATCACCCTGTCATTCTCGGATGAAGTTCAGCTCAACAAGGCCGAGAAGGCATGGAAGCCTGGAGTAAAGCAGTCTTCCACAGTGGGTGATGACCCCGAGGCCATTAAGACCCAGTTACTGATCTGCAAGATGAACAGTACTCTGAACAAGATGACCCCACAGATGTTCCAGCAGTTGATGTGCCAAGTGGACGAGCTGATCATCGACACGGAGCAGCGACTCCAGCCTTTCCGCACTCTGCTTTTGAACCGCTGCCAGAAGGAGTTTGAGACGGAGAAGGGTGGAGACGAGGTCTTCGAGAAGAAGCAGAAGTTGCTGGATGCATCCTTGGTGGACGAGGAGCGGCAGCGTCTACGTGACGAGCTGCAGGAGGCCAAGCACAAGGCCCAGCGGCGCGCGCTAGGCAACATCAGGTTCGTTGGGGAGCTGTTCAAGTTGAAGATGCTGACGAGGACCACCATGCACAATTGCATCGTTGAGCTGTTGAAGAACCATGAAGAGTCCCTGGAGTGCTTGTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162896 lncRNA downstream 52296 21237474 ~ 21240024 (-) True G129927
TU162841 lncRNA downstream 214290 21077742 ~ 21078030 (-) True G129878
TU162801 lncRNA downstream 349871 20942057 ~ 20942449 (-) True G129844
TU162756 lncRNA downstream 446381 20845696 ~ 20845939 (-) True G129807
TU162751 lncRNA downstream 500485 20789741 ~ 20791835 (-) True G129802
TU162922 lncRNA upstream 28506 21333526 ~ 21333999 (-) True G129951
TU163022 lncRNA upstream 696707 22001727 ~ 22084497 (-) True G130033
TU163046 lncRNA upstream 774062 22079082 ~ 22082918 (-) True G130055
TU163091 lncRNA upstream 897026 22202046 ~ 22208897 (-) True AMCG00001268
TU163096 lncRNA upstream 928142 22233162 ~ 22233765 (-) True G130101
AMCG00001251 mRNA downstream 22969 21240482 ~ 21269351 (-) False AMCG00001251
AMCG00001244 mRNA downstream 114517 21166972 ~ 21177803 (-) True AMCG00001244
AMCG00001246 mRNA downstream 137911 21128018 ~ 21154409 (-) True AMCG00001246
AMCG00001245 mRNA downstream 226109 21033058 ~ 21066211 (-) True AMCG00001245
AMCG00001247 mRNA downstream 270683 21007825 ~ 21021637 (-) True AMCG00001247
AMCG00001256 mRNA upstream 115713 21420733 ~ 21427306 (-) True AMCG00001256
AMCG00001257 mRNA upstream 129420 21434440 ~ 21499676 (-) True AMCG00001257
AMCG00001258 mRNA upstream 248714 21553734 ~ 21554075 (-) True AMCG00001258
AMCG00001264 mRNA upstream 302817 21607837 ~ 21612476 (-) True AMCG00001264
AMCG00001261 mRNA upstream 381689 21686709 ~ 21694971 (-) True AMCG00001261
TU162897 other downstream 21937 21247661 ~ 21270383 (-) True AMCG00001251
TU162458 other downstream 2402563 18888765 ~ 18889757 (-) True G129566
TU162357 other downstream 2734103 18555830 ~ 18558217 (-) False AMCG00001196
TU162350 other downstream 2766777 18524892 ~ 18525543 (-) False AMCG00001193
TU161965 other downstream 4118643 17172870 ~ 17173677 (-) False AMCG00001156
TU162985 other upstream 305287 21610307 ~ 21648508 (-) False AMCG00001264
TU162984 other upstream 484188 21789208 ~ 21822820 (-) True G130004
TU163107 other upstream 954423 22259443 ~ 22302448 (-) True AMCG00001270
TU163259 other upstream 1306466 22611486 ~ 22614286 (-) False G130244
TU163521 other upstream 2418372 23723392 ~ 23725279 (-) True G130470

Expression Profile