RNA id: AMCG00001256


Basic Information

Item Value
RNA id AMCG00001256
length 459
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00001256
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21420733 ~ 21427306 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAGGCTTTTCCCTATTCTCCGAACATGGCTGCAATATCAATGAAGATGACCCATTCCAAGAGTGGACCACCCCCGGGCCCTCTTCAGATCCCCCCGTCACTAAGATATCTGAGAAGGATAACTCCTGGCTGTACACCTTGGACCCCATCCTGGTCACCATCATCGCCATGAGCTCTTTGGGCGTCCTGTTGGGAGCTATCTGCGCCGGGCTGCTCCTGTACTGCACGTGCTCCTACAACGGCCTCTCCTCCCGCAGCTCCACCACCCTGGAGAACTACAACTTCGAGCTTTACGACGGAATCAAGCATAAAGTCAAAATCAACCAACAGAGTGCTCTAGTCCTCGGGAACATCCATCACATCTGCCTGTGGCCTAGTGGAGAGGCAGGCATTGAGCCAAGACTACCCTCCAGAGTTCTGCTGCTGAAGGATTCTCGCAGCCCTTTTTTCATCTGA

Function

GO:

id name namespace
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0001755 neural crest cell migration biological_process
GO:0038084 vascular endothelial growth factor signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0007413 axonal fasciculation biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0017154 semaphorin receptor activity molecular_function
GO:0005021 vascular endothelial growth factor-activated receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162922 lncRNA downstream 86734 21333526 ~ 21333999 (-) True G129951
TU162896 lncRNA downstream 180709 21237474 ~ 21240024 (-) True G129927
TU162841 lncRNA downstream 342703 21077742 ~ 21078030 (-) True G129878
TU162801 lncRNA downstream 478284 20942057 ~ 20942449 (-) True G129844
TU162756 lncRNA downstream 574794 20845696 ~ 20845939 (-) True G129807
TU163022 lncRNA upstream 574421 22001727 ~ 22084497 (-) True G130033
TU163046 lncRNA upstream 651776 22079082 ~ 22082918 (-) True G130055
TU163091 lncRNA upstream 774740 22202046 ~ 22208897 (-) True AMCG00001268
TU163096 lncRNA upstream 805856 22233162 ~ 22233765 (-) True G130101
TU163100 lncRNA upstream 826445 22253751 ~ 22254154 (-) True G130105
AMCG00001255 mRNA downstream 115713 21292320 ~ 21305020 (-) True AMCG00001255
AMCG00001251 mRNA downstream 151382 21240482 ~ 21269351 (-) False AMCG00001251
AMCG00001244 mRNA downstream 242930 21166972 ~ 21177803 (-) True AMCG00001244
AMCG00001246 mRNA downstream 266324 21128018 ~ 21154409 (-) True AMCG00001246
AMCG00001245 mRNA downstream 354522 21033058 ~ 21066211 (-) True AMCG00001245
AMCG00001257 mRNA upstream 7134 21434440 ~ 21499676 (-) True AMCG00001257
AMCG00001258 mRNA upstream 126428 21553734 ~ 21554075 (-) True AMCG00001258
AMCG00001264 mRNA upstream 180531 21607837 ~ 21612476 (-) True AMCG00001264
AMCG00001261 mRNA upstream 259403 21686709 ~ 21694971 (-) True AMCG00001261
AMCG00001263 mRNA upstream 280121 21707427 ~ 21711919 (-) True AMCG00001263
TU162897 other downstream 150350 21247661 ~ 21270383 (-) True AMCG00001251
TU162458 other downstream 2530976 18888765 ~ 18889757 (-) True G129566
TU162357 other downstream 2862516 18555830 ~ 18558217 (-) False AMCG00001196
TU162350 other downstream 2895190 18524892 ~ 18525543 (-) False AMCG00001193
TU161965 other downstream 4247056 17172870 ~ 17173677 (-) False AMCG00001156
TU162985 other upstream 183001 21610307 ~ 21648508 (-) False AMCG00001264
TU162984 other upstream 361902 21789208 ~ 21822820 (-) True G130004
TU163107 other upstream 832137 22259443 ~ 22302448 (-) True AMCG00001270
TU163259 other upstream 1184180 22611486 ~ 22614286 (-) False G130244
TU163521 other upstream 2296086 23723392 ~ 23725279 (-) True G130470

Expression Profile