RNA id: TU163699


Basic Information

Item Value
RNA id TU163699
length 834
lncRNA type sense_over
GC content 0.44
exon number 4
gene id AMCG00001303
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24404787 ~ 24419606 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCTGCTCAGCTGATCGTGACGCGGGAGGCGCACAGTGTAGAGACCCAGAGGCACATTGTGCTCAATAAAGACATTATTTTCGGTGGTGTGGAAGGAAACGTTAGGATATAAGTTGCTAACGATATCAACAAAGCAGAAAGTGAGCTGAATGGTCGCTTGGGAAACGGGGCTGTATTTCCTCTGGACTACCGACTGCAACGTCCGTTATTAAGAAGcgcatttatatataaacaaacgaCACTTTAACCCCGTTAGAACAGATAGCGGCGCAGCGGCGCAGCATCTCAGCACTGAAACAGAAAGAGCTGTAAAAAAGACAGGAGAGGGGACTTCGTGATTCCAAATCTGTGGGGGAAGACATGGTGGATTATTATGACATTCTAGGAGTGTCAAGAAACGCTTCTCAGGATGATATCAAAAAGGCttacaGAAAGTTGGCACTGCGGTGGCACCCTGACAAGAACCCAGACAACAAGGATCAGGCAGAGCAGAAATTCAAGGAGATAGCCGAGGCCTATGAAGTGCTGTCTGACActgcctaaaacttttgcacaatactgtatgtGTGCCAAAGTCATGGAGAGCCCTGTGTTTTAGTCCACACTTGCACACTTGTGTGTTGGATTGATGTCCATGCTGCTTCTGAAGAAAGTTGGCTTCATCAGATGGCTTTTTTGATATTAGTCTGTTCTACCTGTATACCTcctggcagattttttttttttgtacttaaatATTGATCTTTTAGAAATTTTATGAATCAAGACTAACCTGTCATAGCAGGGGCCCTGTGCCTTGCAAAACTTTTctttaaactgtatttcagtcctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163692 lncRNA downstream 13567 24394526 ~ 24400536 (-) True AMCG00001306
TU163667 lncRNA downstream 59862 24330250 ~ 24354241 (-) True G130591
TU163646 lncRNA downstream 219699 24190999 ~ 24194404 (-) False G130574
TU163645 lncRNA downstream 219699 24192467 ~ 24194404 (-) True G130574
TU163588 lncRNA downstream 496885 23916993 ~ 23917218 (-) True G130528
TU163729 lncRNA upstream 157368 24576974 ~ 24578958 (-) True G130633
TU163744 lncRNA upstream 275202 24694808 ~ 24695031 (-) True G130646
TU163774 lncRNA upstream 495115 24914721 ~ 24914981 (-) True G130671
TU163781 lncRNA upstream 554273 24973879 ~ 24974084 (-) True G130678
TU163789 lncRNA upstream 605182 25024788 ~ 25025012 (-) True G130686
AMCG00001306 mRNA downstream 13557 24399779 ~ 24400546 (-) False AMCG00001306
AMCG00001308 mRNA downstream 31292 24375904 ~ 24382811 (-) True AMCG00001308
AMCG00001304 mRNA downstream 38252 24374675 ~ 24375851 (-) True AMCG00001304
AMCG00001301 mRNA downstream 48508 24355089 ~ 24365595 (-) True AMCG00001301
AMCG00001296 mRNA downstream 272083 24114300 ~ 24142020 (-) True AMCG00001296
AMCG00001307 mRNA upstream 2541 24422147 ~ 24436699 (-) True AMCG00001307
AMCG00001305 mRNA upstream 19800 24439406 ~ 24471079 (-) True AMCG00001305
AMCG00001316 mRNA upstream 177963 24597569 ~ 24673110 (-) True AMCG00001316
AMCG00001318 mRNA upstream 296931 24716537 ~ 24717056 (-) True AMCG00001318
AMCG00001320 mRNA upstream 386399 24806005 ~ 24865316 (-) True AMCG00001320
TU163521 other downstream 688824 23723392 ~ 23725279 (-) True G130470
TU163259 other downstream 1799817 22611486 ~ 22614286 (-) False G130244
TU163107 other downstream 2111655 22259443 ~ 22302448 (-) True AMCG00001270
TU162984 other downstream 2591283 21789208 ~ 21822820 (-) True G130004
TU162985 other downstream 2765595 21610307 ~ 21648508 (-) False AMCG00001264
TU163711 other upstream 15483 24435089 ~ 24439649 (-) True G130622
TU163736 other upstream 207236 24626842 ~ 24646001 (-) False AMCG00001316
TU163741 other upstream 249340 24668946 ~ 24685570 (-) False AMCG00001316
TU163769 other upstream 406687 24826293 ~ 24836873 (-) True G130667
TU163842 other upstream 803290 25222896 ~ 25224928 (-) True G130735

Expression Profile