RNA id: TU163692


Basic Information

Item Value
RNA id TU163692
length 928
lncRNA type sense_over
GC content 0.43
exon number 3
gene id AMCG00001306
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24394526 ~ 24400546 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTggtatgttttgattttgcaaTTCAGTTTGATGGCCCTTTTGAAACACAGTGAAAATCTGCCTGTTATAATTTCCTCATGGGTCTCGTGTGGAACCTTGTAATAAGCACAGTCAGATTTGTTAGCCcacaagatgtgtgtgtgtgtgtgtgtttgctgagccagtctgtgtctgtgttcctGCAGGTGTGGAGGATGAGATGGCCCTGGCTTTGGAGCTCAGCCGGAGGGAGCAGAACAGTCATCCCCAGCAGTCCCTCCTGGATCATGGCAGCTTTGCCCGTGGCTCTCCTGCTCAGAGGTCCTTCAGCTCAGAGTCCTTCTTCAGTCACCCAGACGGTGGCAACATAGAGGACGAGGACGATGAAGACCTGCAGATGGCACTGGCCTACAGCTTGTCGGAGATGGATGGCCCACACAGAGCAGACCCTGACTTCCACGCCTACACTGGTTGACAAGCCACACTGCTTTCTACAGAGGTGTGACTTGAGAGAACTGTTGGCACTTTGGCAAGAAACTGGCAGAGATGGAATTTTTCaaagttttatttgaaaaaagaaaaaaagaaacttcatgtatgtactgtgtatgtgtgtgtatatagagcAATATAAAACTGGATTTGTATAAAGGATTAAGTATTACATATGCATTAGGTCATCCTTCTTGGACTGTAAAACTGGagacaaataaagcattttataaaGAAGCTATTTGCACCATGGTTACTTGAAAATACTTTGTTTCCAGGTGATTATCTAAACTAACATAATCCTTTTAAGCTACAATCCTGGTATTGGATGGATTTAGGTATAAGAAGCACTTGGCATTGTCTTGGACCTGAAATGACCTATTTATTAACATTGCATATGAACTTCAACacagacatacactcacctaaaggattattaggaacaccatactaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163667 lncRNA downstream 40285 24330250 ~ 24354241 (-) True G130591
TU163646 lncRNA downstream 200122 24190999 ~ 24194404 (-) False G130574
TU163645 lncRNA downstream 200122 24192467 ~ 24194404 (-) True G130574
TU163588 lncRNA downstream 477308 23916993 ~ 23917218 (-) True G130528
TU163534 lncRNA downstream 623663 23770409 ~ 23770863 (-) True G130483
TU163699 lncRNA upstream 13567 24414103 ~ 24419606 (-) False AMCG00001303
TU163729 lncRNA upstream 176438 24576974 ~ 24578958 (-) True G130633
TU163744 lncRNA upstream 294272 24694808 ~ 24695031 (-) True G130646
TU163774 lncRNA upstream 514185 24914721 ~ 24914981 (-) True G130671
TU163781 lncRNA upstream 573343 24973879 ~ 24974084 (-) True G130678
AMCG00001308 mRNA downstream 11715 24375904 ~ 24382811 (-) True AMCG00001308
AMCG00001304 mRNA downstream 18675 24374675 ~ 24375851 (-) True AMCG00001304
AMCG00001301 mRNA downstream 28931 24355089 ~ 24365595 (-) True AMCG00001301
AMCG00001296 mRNA downstream 252506 24114300 ~ 24142020 (-) True AMCG00001296
AMCG00001295 mRNA downstream 509838 23866621 ~ 23884688 (-) True AMCG00001295
AMCG00001303 mRNA upstream 4251 24404787 ~ 24419606 (-) False AMCG00001303
AMCG00001307 mRNA upstream 21611 24422147 ~ 24436699 (-) True AMCG00001307
AMCG00001305 mRNA upstream 38870 24439406 ~ 24471079 (-) True AMCG00001305
AMCG00001316 mRNA upstream 197033 24597569 ~ 24673110 (-) True AMCG00001316
AMCG00001318 mRNA upstream 316001 24716537 ~ 24717056 (-) True AMCG00001318
TU163521 other downstream 669247 23723392 ~ 23725279 (-) True G130470
TU163259 other downstream 1780240 22611486 ~ 22614286 (-) False G130244
TU163107 other downstream 2092078 22259443 ~ 22302448 (-) True AMCG00001270
TU162984 other downstream 2571706 21789208 ~ 21822820 (-) True G130004
TU162985 other downstream 2746018 21610307 ~ 21648508 (-) False AMCG00001264
TU163698 other upstream 4254 24404790 ~ 24419606 (-) True AMCG00001303
TU163711 other upstream 34553 24435089 ~ 24439649 (-) True G130622
TU163736 other upstream 226306 24626842 ~ 24646001 (-) False AMCG00001316
TU163741 other upstream 268410 24668946 ~ 24685570 (-) False AMCG00001316
TU163769 other upstream 425757 24826293 ~ 24836873 (-) True G130667

Expression Profile