RNA id: AMCG00001308


Basic Information

Item Value
RNA id AMCG00001308
length 1704
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00001308
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24375904 ~ 24382811 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGGAATGTTTTTGCTGGCAACATGGGTTGTCTGTGGCCTGGCATATGTTCAGATGGAGAGTAAAGATCCATTTGAAATAGAGGCTGACTTGCATGGGAGGGTGAAGAGAATCCCTGATGAAGATGGGTTACTCTTGGATGACTACATGTCTCTGCATCTTCATGGGTCAAAAGAGGATGCTGAAAAAATGGGTGCTTTTCCTCCCCAGCCTGGTGTTGATGGTGATGAAATGAGCATGGCTTGGCATGACTTGGCGCATGACCATGAGGAAGCATGGAAGTCTCCACAAGATCCTGTAGAAGTTTCTAACTGGGGTAACCTGGTGAACAAAAATGTTGACCGTAATGCCTTCTACTTCAATGAGCATGGTGCTTATGATCATGCCCGCTCTAATCCTATAAAAGTGGCTAATGTTGTTAGTCATGCTGATGGTTACTGGGGTGAAGACTCTGACCTCCAAGTGGGTCTGAAGGATGTGGATCAAGATGGTGACTTGGAAGTGGCTGAATCGGAGTACGTAGGCTCAGACTGGCTTGATCAGTCCACCTTACCAAGAGATGTGGAGAGACTTCTGCTGAACAGGGATACTGAAGCTGTTGCTCCTCGTGTTGCAGTTTCTCCCAATGATAATGAGATGAATGATGCCACCTTTGAGGCTGAGGAGACTGACCTGCATTTAAATGAAGCTGATGAGCATGTTCATGATCTATGGGAGTCCTTGTCCTACAATTGGATCTATTTTGGGAATGTTGCCGTGGGTCTAAAAGTGATAGGTGATGAGGTCCACGGTGGTGGCCTCCCAGATGATGCTGAAGGTTCAGACTCTGAGCCTGAGGAAGAGGCCATGACCCAAGTTCCACAGCCAAGTGTTACTTGTGAGAAGAGCAGACTGTTGATCCAGTTCTCCTTGCAGCGTCATGCTCGGATCTTCCTGCAGAAAGACCGAATGAGGCCACTCCCAGTTCTGAAGCTCCCCAGGTCCTGTAAGCACACCGTGaggcacagcaacagcagcctGGTGCTGATGGCATCCTTCGATGGCTGCTATGTAAGGAATTTGAGGAAGGACAATCGACTCCATGAAGCGCTGACCCTCAAGTACTATGACCTGATCCTGAAGAGGCCATTTGTGACCACTGTGTCTTGCCCAGTGACCACCGCTCCAATGCCTGAACCTCCCAAAGGCCTGTCCATCTCCTGCAGTGATGTGTGCATGACGGTGCAGCTACCTGCTGGTCCCCTGTCGGCTGTGCAAATCCTGGATTCCTCCAAAACCTTGGTCCCTGTGCTGCAGGCCCCCAAGCTCTGTGGCTATGCCTTGGTGAAGAAGGATGGCAAGAACCTCCTGACCATCCCCTACACAGCCTGTGATGTAAAGATGGTGGAGAAGAGGTACATTATCCAGGTGGCTTATGTGACTAGTGGAGGAGAGCGAGCAGAGATCCAGGTGGTGGGGGAGACCACGATCTACCTGGCTGAAGTAATGGCCCTGGTCAGGCGCAATAGCCTGAACTATGGAGTCATCACTAGGGACAGTCCCTTCAGGCTGCTGGTGGAGTGTCGTTATGCAGAGGGGAACTTGGCCAGCACTGGATACCTGGTGAAAAACCCCTACCTGCCCAATGCAATTCTGTCCCATGGAGTGTTTGGGGTGCAGCTCAGGATTGCCACAGGTGACTATGGGATCCTTGCTGCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163667 lncRNA downstream 21663 24330250 ~ 24354241 (-) True G130591
TU163646 lncRNA downstream 181500 24190999 ~ 24194404 (-) False G130574
TU163645 lncRNA downstream 181500 24192467 ~ 24194404 (-) True G130574
TU163588 lncRNA downstream 458686 23916993 ~ 23917218 (-) True G130528
TU163534 lncRNA downstream 605041 23770409 ~ 23770863 (-) True G130483
TU163692 lncRNA upstream 11715 24394526 ~ 24400536 (-) True AMCG00001306
TU163699 lncRNA upstream 31292 24414103 ~ 24419606 (-) False AMCG00001303
TU163729 lncRNA upstream 194163 24576974 ~ 24578958 (-) True G130633
TU163744 lncRNA upstream 311997 24694808 ~ 24695031 (-) True G130646
TU163774 lncRNA upstream 531910 24914721 ~ 24914981 (-) True G130671
AMCG00001304 mRNA downstream 53 24374675 ~ 24375851 (-) True AMCG00001304
AMCG00001301 mRNA downstream 10309 24355089 ~ 24365595 (-) True AMCG00001301
AMCG00001296 mRNA downstream 233884 24114300 ~ 24142020 (-) True AMCG00001296
AMCG00001295 mRNA downstream 491216 23866621 ~ 23884688 (-) True AMCG00001295
AMCG00001293 mRNA downstream 754982 23616471 ~ 23620922 (-) True AMCG00001293
AMCG00001306 mRNA upstream 16968 24399779 ~ 24400546 (-) False AMCG00001306
AMCG00001303 mRNA upstream 21976 24404787 ~ 24419606 (-) False AMCG00001303
AMCG00001307 mRNA upstream 39336 24422147 ~ 24436699 (-) True AMCG00001307
AMCG00001305 mRNA upstream 56595 24439406 ~ 24471079 (-) True AMCG00001305
AMCG00001316 mRNA upstream 214758 24597569 ~ 24673110 (-) True AMCG00001316
TU163521 other downstream 650625 23723392 ~ 23725279 (-) True G130470
TU163259 other downstream 1761618 22611486 ~ 22614286 (-) False G130244
TU163107 other downstream 2073456 22259443 ~ 22302448 (-) True AMCG00001270
TU162984 other downstream 2553084 21789208 ~ 21822820 (-) True G130004
TU162985 other downstream 2727396 21610307 ~ 21648508 (-) False AMCG00001264
TU163698 other upstream 21979 24404790 ~ 24419606 (-) True AMCG00001303
TU163711 other upstream 52278 24435089 ~ 24439649 (-) True G130622
TU163736 other upstream 244031 24626842 ~ 24646001 (-) False AMCG00001316
TU163741 other upstream 286135 24668946 ~ 24685570 (-) False AMCG00001316
TU163769 other upstream 443482 24826293 ~ 24836873 (-) True G130667

Expression Profile