RNA id: TU163741


Basic Information

Item Value
RNA id TU163741
length 489
RNA type TUCP
GC content 0.53
exon number 4
gene id AMCG00001316
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24597569 ~ 24685570 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGTCTGCGCCGGTGTCCCTCTGTCTTTACCCCTGTCTTATTGGACTTCAACTTCAGCGCAGCCCCACTCGGCTCAGAGCCCTCCAGTGTGCTGTTGATGTTTGAGAACAAGGGGACCATTCCTGTGGAGTGGTCCTTCCTGTTTCCAGCTGACCAGCAGATTGAGCTGGAGTACTGGGCAGAAAGCGGGGAGTTTGATGCCACTGAGCTGCACGAGATGAGGGTTCAGGATAACAAACTCTTTGGCATTTCCCCGAGATCTGGCAGTCTCCTCCCTGGCCAACAGAGGGCAGTACAGCTCACCTACAGGCATGAGTTTGCAGGCACAGATCATCTTCCAGTTCTCCTGAAGGTGTCACATGGGCGTGAGATACTGTTAAACTTCATTGGCGTGACACTAGAGAAGGACAGACGCTACATTCACTTCACCTCCAGCAAGCACACTTTTGCCCCTGTCGCAATCGGTAGCTTCAGCCCTCCAAAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163729 lncRNA downstream 89988 24576974 ~ 24578958 (-) True G130633
TU163699 lncRNA downstream 249340 24414103 ~ 24419606 (-) False AMCG00001303
TU163692 lncRNA downstream 268410 24394526 ~ 24400536 (-) True AMCG00001306
TU163667 lncRNA downstream 314705 24330250 ~ 24354241 (-) True G130591
TU163645 lncRNA downstream 474542 24192467 ~ 24194404 (-) True G130574
TU163744 lncRNA upstream 9238 24694808 ~ 24695031 (-) True G130646
TU163774 lncRNA upstream 229151 24914721 ~ 24914981 (-) True G130671
TU163781 lncRNA upstream 288309 24973879 ~ 24974084 (-) True G130678
TU163789 lncRNA upstream 339218 25024788 ~ 25025012 (-) True G130686
TU163793 lncRNA upstream 371051 25056621 ~ 25056920 (-) True G130690
AMCG00001305 mRNA downstream 197867 24439406 ~ 24471079 (-) True AMCG00001305
AMCG00001307 mRNA downstream 232247 24422147 ~ 24436699 (-) True AMCG00001307
AMCG00001303 mRNA downstream 249340 24404787 ~ 24419606 (-) False AMCG00001303
AMCG00001306 mRNA downstream 268400 24399779 ~ 24400546 (-) False AMCG00001306
AMCG00001308 mRNA downstream 286135 24375904 ~ 24382811 (-) True AMCG00001308
AMCG00001318 mRNA upstream 30967 24716537 ~ 24717056 (-) True AMCG00001318
AMCG00001320 mRNA upstream 120435 24806005 ~ 24865316 (-) True AMCG00001320
AMCG00001321 mRNA upstream 297011 24982581 ~ 25010615 (-) True AMCG00001321
AMCG00001323 mRNA upstream 533532 25219102 ~ 25223511 (-) True AMCG00001323
AMCG00001326 mRNA upstream 558075 25243645 ~ 25246650 (-) True AMCG00001326
TU163736 other downstream 22945 24626842 ~ 24646001 (-) False AMCG00001316
TU163711 other downstream 229297 24435089 ~ 24439649 (-) True G130622
TU163698 other downstream 249340 24404790 ~ 24419606 (-) True AMCG00001303
TU163521 other downstream 943667 23723392 ~ 23725279 (-) True G130470
TU163259 other downstream 2054660 22611486 ~ 22614286 (-) False G130244
TU163769 other upstream 140723 24826293 ~ 24836873 (-) True G130667
TU163842 other upstream 537326 25222896 ~ 25224928 (-) True G130735
TU163843 other upstream 537326 25222896 ~ 25246452 (-) False G130735
TU163851 other upstream 590232 25275802 ~ 25277397 (-) False AMCG00001327
TU163889 other upstream 703657 25389227 ~ 25413847 (-) True G130767

Expression Profile