RNA id: AMCG00001320


Basic Information

Item Value
RNA id AMCG00001320
length 687
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00001320
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24806005 ~ 24865316 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATAGCTACCTTGTGCCTTTACTTTTCGCCTCGCCTTGCCAGCTGGTAGCGACTGATACCGGAGTGAAGCGGCCCGAGTCACTCCTGTCCGTCCGTAaaCGAAGTGTTACCGTTATAAGCGGAAGAGGCAAAACCGGCGGAAAGCAGAGAGCGAAGGCCAAGACTCGCTCCTCCAGGGCTGGACTACAGTTCCTAGTCGGCCGTGTCCACAGGCTGCTGCGGAAGGGAAACTATGCCCAGCGCGTCGGTGCTGGAGCCCCGGACAGTGATAAAGAGTCCAACAAAGGATTTGTGAGAGCTGGACGACTCAGGGCAGTGATCCCACCCGGCCAGACAAAAGAGATTAGTTGCAGCGTAAGAACAGGGCCACTACCCACCAAACAGGAAGTCCTCTTCGAACCAAACGAGAACCCCAGATGGCCAGAAGGTCTGAATATTGCTGAAACGATCATCTGTCTGCAGAAAGTGATGGAGGAGCCGGAGACTGTGGACCCAGAACAACAGGAGACGGAAGAGGAAGATGAGATGGATGCAAATGAAGAAGAACATGAAATAGCTGGAGTGGGAGAGGAAAACGTGGAGCCTGTGGAAGCAGAATGCAGGGTGTCGGacgatgaagatgatgatgaagacATCATGCCCCACTCGAAATGGCCCAAAGTAAAGCAGGAGAATACGGACTGA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163744 lncRNA downstream 110974 24694808 ~ 24695031 (-) True G130646
TU163729 lncRNA downstream 227047 24576974 ~ 24578958 (-) True G130633
TU163699 lncRNA downstream 386399 24414103 ~ 24419606 (-) False AMCG00001303
TU163692 lncRNA downstream 405469 24394526 ~ 24400536 (-) True AMCG00001306
TU163667 lncRNA downstream 451764 24330250 ~ 24354241 (-) True G130591
TU163774 lncRNA upstream 49405 24914721 ~ 24914981 (-) True G130671
TU163781 lncRNA upstream 108563 24973879 ~ 24974084 (-) True G130678
TU163789 lncRNA upstream 159472 25024788 ~ 25025012 (-) True G130686
TU163793 lncRNA upstream 191305 25056621 ~ 25056920 (-) True G130690
TU163794 lncRNA upstream 219263 25084579 ~ 25084785 (-) True G130691
AMCG00001318 mRNA downstream 88949 24716537 ~ 24717056 (-) True AMCG00001318
AMCG00001316 mRNA downstream 132895 24597569 ~ 24673110 (-) True AMCG00001316
AMCG00001305 mRNA downstream 334926 24439406 ~ 24471079 (-) True AMCG00001305
AMCG00001307 mRNA downstream 369306 24422147 ~ 24436699 (-) True AMCG00001307
AMCG00001303 mRNA downstream 386399 24404787 ~ 24419606 (-) False AMCG00001303
AMCG00001321 mRNA upstream 117265 24982581 ~ 25010615 (-) True AMCG00001321
AMCG00001323 mRNA upstream 353786 25219102 ~ 25223511 (-) True AMCG00001323
AMCG00001326 mRNA upstream 378329 25243645 ~ 25246650 (-) True AMCG00001326
AMCG00001327 mRNA upstream 410503 25275819 ~ 25279969 (-) True AMCG00001327
AMCG00001336 mRNA upstream 712372 25577688 ~ 25584557 (-) True AMCG00001336
TU163741 other downstream 120435 24668946 ~ 24685570 (-) False AMCG00001316
TU163736 other downstream 160004 24626842 ~ 24646001 (-) False AMCG00001316
TU163711 other downstream 366356 24435089 ~ 24439649 (-) True G130622
TU163698 other downstream 386399 24404790 ~ 24419606 (-) True AMCG00001303
TU163521 other downstream 1080726 23723392 ~ 23725279 (-) True G130470
TU163842 other upstream 357580 25222896 ~ 25224928 (-) True G130735
TU163843 other upstream 357580 25222896 ~ 25246452 (-) False G130735
TU163851 other upstream 410486 25275802 ~ 25277397 (-) False AMCG00001327
TU163889 other upstream 523911 25389227 ~ 25413847 (-) True G130767
TU163894 other upstream 556608 25421924 ~ 25423354 (-) True G130771

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067176 True 503 mRNA 0.52 1 NC_007118.7 6367904 ~ 6368406 (-)