RNA id: TU163851


Basic Information

Item Value
RNA id TU163851
length 534
RNA type TUCP
GC content 0.43
exon number 3
gene id AMCG00001327
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25275802 ~ 25279969 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCAGATTGAATTTGAAAGGTAAGAAAAGCAAATGTAGCAAATGCAGCCTTATAGACTCAACAGCTGAGTTAGACGTTTCAAAGACACTCTCCTAGGTATTTTGCTGTTTTCATCTATGCACATAAATATCATGTTTTCCATTCTTAGTGTAAAGGTGACACCTCTGGATTCAATGAGGAGAATCTTCTTTACTGTGTAATAGATTTGTTTGCCGCTGGAACCGAGACTCTATCCAAAACTCTGCTCTGGGGTCTTCTATACATGGTCAAATATCCTGAAATTCAAGAGAAGGTGCAGAATGAGATAGAACGAGTGATTGGACAGGAACGCCAGCCCTCCATGGATGACAGGCCCAGCATGCCCTACACCTATGCTGTGATCCACGAAATTCAAAGATTTGCCAACATACTTCCTATCACTCCCCCAAGGGTCTCCCATTATGACACCACCATAGCTGGATATGATATTCCCAAAGGAGTTATGGTGTTGCCCCTGCTGATGCCAATACTGTATGACAAGAGCGAGTATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163811 lncRNA downstream 73758 25201300 ~ 25202044 (-) True G130708
TU163801 lncRNA downstream 144007 25131422 ~ 25131795 (-) True G130698
TU163796 lncRNA downstream 188923 25086659 ~ 25086879 (-) True G130693
TU163794 lncRNA downstream 191017 25084579 ~ 25084785 (-) True G130691
TU163793 lncRNA downstream 218882 25056621 ~ 25056920 (-) True G130690
TU163854 lncRNA upstream 17982 25295379 ~ 25296852 (-) True G130739
TU163882 lncRNA upstream 102521 25379918 ~ 25383294 (-) False G130764
TU163884 lncRNA upstream 102521 25379918 ~ 25383294 (-) True G130764
TU163892 lncRNA upstream 143632 25421029 ~ 25421344 (-) True G130769
TU163898 lncRNA upstream 154046 25431443 ~ 25431667 (-) True G130775
AMCG00001326 mRNA downstream 29152 25243645 ~ 25246650 (-) True AMCG00001326
AMCG00001323 mRNA downstream 52291 25219102 ~ 25223511 (-) True AMCG00001323
AMCG00001321 mRNA downstream 265187 24982581 ~ 25010615 (-) True AMCG00001321
AMCG00001320 mRNA downstream 410486 24806005 ~ 24865316 (-) True AMCG00001320
AMCG00001318 mRNA downstream 558746 24716537 ~ 24717056 (-) True AMCG00001318
AMCG00001336 mRNA upstream 300291 25577688 ~ 25584557 (-) True AMCG00001336
AMCG00001341 mRNA upstream 398171 25675568 ~ 25707676 (-) True AMCG00001341
AMCG00001340 mRNA upstream 431454 25708851 ~ 25716069 (-) True AMCG00001340
AMCG00001339 mRNA upstream 449986 25727383 ~ 25734042 (-) True AMCG00001339
AMCG00001342 mRNA upstream 472945 25750342 ~ 25762406 (-) True AMCG00001342
TU163843 other downstream 29350 25222896 ~ 25246452 (-) False G130735
TU163842 other downstream 50874 25222896 ~ 25224928 (-) True G130735
TU163769 other downstream 438929 24826293 ~ 24836873 (-) True G130667
TU163741 other downstream 590232 24668946 ~ 24685570 (-) False AMCG00001316
TU163736 other downstream 629801 24626842 ~ 24646001 (-) False AMCG00001316
TU163889 other upstream 111830 25389227 ~ 25413847 (-) True G130767
TU163894 other upstream 144527 25421924 ~ 25423354 (-) True G130771
TU163903 other upstream 164216 25441613 ~ 25442631 (-) True G130779

Expression Profile