RNA id: AMCG00001339


Basic Information

Item Value
RNA id AMCG00001339
length 2879
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00001339
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25727383 ~ 25734042 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCCAAGACAGCGGGCCTCCCTTTCCGCCGCGCAGTCTGCAGCACGCATGCGCATGAGCGGCGCGCAGACTCAGATGCCCGTCGTCGTGGGGAGAGAGCAGCAGCGTGGAGAGCCGCCGCACAGCCGCCGCACAGCCGCGCTTATAGCCTCACGGAAGAGGAAGACGTTAATGAGTTATTGAAGATGTTGGTGCTGTTTGAGACCGCCGCCGGCTATGCCATCTTTAAGGTcctggatgaaaaaaaaatccaggagGTGGACAGTCTGTGGAAGGAATTTGAAACTCCAGAAAAAGCCAATAAAATAGTGAAGCTCAAACACTTTGAAAAATTCCAGGACACCACCGAAGCACTGGCAGctGCCACTGCTTTGGTTGAAGGAAAGATCGGAAAAAGTCTGAAGAAGGTGCTGAAGAAGGTGGTGGCCAAAGAAGCGCATGAGCAGCTGGCTATCAGCGATGCTAAACTAGGAGGAGTGATCAAGGACAAGCTGAGCCTGAGTTGTGTGCACAGCCCGGCCGTGGCGGAGCTCATGAGGGGGATTCGCAAACAGATGGAGGGGCTGATCACTGGCCTGCCGCCCCGGGAGATGAGCGCCATGGCTCTGGGCCTGGCTCACAGCCTGTCGCGGTACAAACTGAAATTCAGTCCAGACAAAGTGGATACCATGATTGTTCAAGCTATATCTCTGCTTGACGATTTGGACAAGGAGCTGAACAATTACATCATGCGCTGCCGAGAGTGGTATGGGTGGCACTTCCCTGAGCTGGGAAAGATCATCACCGACAACCTGGCCTACTGTAAAAGTGTACGGAAAATAGGGGTCAGGACTAACGTGGCCACCACAGATCTCTCCGAGTTCCTGCCAGAGGAGGTGGAGGCTGAAGTGAAAACGGCGGCTGAGATCTCCATGGGCACAGAGGTTTCTGAGGAAGACATCAGCAACATCATGCACTTGTGTGACCAGGTGATTGAGATTTCGGAGTATCGGACACAGCTGTACGACTACCTGAAGAACAGgatgatggccatagcccccaACCTCACCATCATGGTGGGAGAGCTGGTGGGAGCAAGACTCATCTCACACGCTGGATCTCTGCTGAATTTAGCCAAGCACCCAGCCTCCACTGTCCAGATCCTGGGTGCAGAGAAAGCTCTGTTCAGGGCCTTGAAGACCAAGAGGGACACTCCTAAGTACGGCCTAATCTATCATGCTTCCTTAGTAGGACAGACCACACCAAAGAACAAGGGAAAGATCTCCAGGATGCTGGCAGCCAAGGCAGCGCTGGCGATCAGATACGACGCTCTGGGCGacgacacaaacacagaaatgggAACTGAAAACCGAGCCAAGCTGGAGGCCAGGCTACGACACATAGAAGACAAAGGAATCAGAAGAATAAGCGGTACAGGAAAGGCGTTGGCGAAGGCAGAAAAGTACCAGCACAAGAGTGACGTTAAGGTCTACGACCCCTCCGGCGACTCCACACTACCCTCGGTATCGAAGAAAAGGAAGtttgaagaggaggaggaggaagaggagcagcCTGTTGCGGTGAAGGCAAAGAAAGTTAAGAAGGAACAAGTGGCAGAAGAAGCGGCAGAGACAGAAGAGGGAGAGCCTcctaaaaagaagaaaaagaagaaggagaagaagcagGAGGCTGctgaagaggaggaggcagcGGAAGAGCCCAGCACCAGCGTTGCAGCTGAAGAGaccacagaaaagaagaaaaagaagaagaagaaatccaAAGATGACTGAACATGAGAtgtctgtttttacttttgtaccCGACCCTTTTCTTTGTCAGCATACAATTTAGGTTTTTATACGTAGTGGAGTCTGTGCAATACGGTATTCGTTATACGTTTGTCACAAAACTCCCAAGATCATGTGAAAACTGATTCATGTACCATAGGTTGTTCTGTAACGTTGTTTTACAGACTGTTGGACAGTGCAGATTGGTCCTGGCAATTTGCTTGTGAAAGACATGTACACCGTGCTAAACAGTGGCATTGTGGATCGAAGTGAAAAGACGtaaaatcaatttaaagcaaatatgtGCTTTTTATGTTGTATCTAACGTTCGCCTTATACAGATTAAtgtaacctttttattttgctaatctTTGATAActtttggttttaaacaaacatatctTTGGTCCACTGTCCAGTTGACATTTCTCTTTGGAAGTGTCTCGATGCTCTGTGAAAGCATTAAAGCAGTTACCCTATGATTTTTCTTTAGTGGGGAATGCAATTCAGATTGCTTTGTTTAGAAACATAGAGTACAAGTCAAAATTGCTGTTTGATCAAACCTAGAAATGTGAGGTTCCTGGACCTCTGCACAAATTTGATcttgtaatgtattaaatgcatttattttactatgtGGTGTTCCCTTGTTCTGgtttgttaaatatattcattgtaACAATTCTGCTGTTGGAATGTCTTGATTCAGTTTAGATCGTCCATTTCTGTAGTGTCcacatttcttctttaaaaCTGCAGGATCAGACCTAAAACATTCTGGAAACTTCTTGTGTATTCCATGTTGTTTACAAAAGTGcatgaatacaatttaaagtttTCCGTCTTGATTTGTGAGCAGCGGTGGATGAAAAATGGGTTTAAGGAGTTAAAATTTGGGAAACTTGTAACGCTACAAACATCTTCTGTAGCCGTCAAATTGTCTTGAGTTTTTCACaacaggcttttaaaaatgatactgctctaatacatatacacacacaatgtaacCTGTTTTGTGACTGGATGTTATGGGACATGGTGAGTTCATTTTGGGATGGGAAAGCCATATTGGTCAGGGGCGGGAGTGTTGGCAAAGTCCCAATGTCTGTG

Function

GO: NA

KEGG:

id description
K14565 NOP58; nucleolar protein 58

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163905 lncRNA downstream 276309 25449256 ~ 25451074 (-) True G130781
TU163902 lncRNA downstream 286557 25437645 ~ 25440826 (-) True G130778
TU163900 lncRNA downstream 292264 25434916 ~ 25435119 (-) True G130777
TU163898 lncRNA downstream 295716 25431443 ~ 25431667 (-) True G130775
TU163892 lncRNA downstream 306039 25421029 ~ 25421344 (-) True G130769
TU164065 lncRNA upstream 391769 26125811 ~ 26132592 (-) True G130921
TU164092 lncRNA upstream 554506 26288548 ~ 26293255 (-) True G130944
TU164143 lncRNA upstream 753151 26487193 ~ 26487686 (-) True G130980
TU164183 lncRNA upstream 896194 26630236 ~ 26630628 (-) True G131015
TU164184 lncRNA upstream 921969 26656011 ~ 26656252 (-) True G131016
AMCG00001340 mRNA downstream 11314 25708851 ~ 25716069 (-) True AMCG00001340
AMCG00001341 mRNA downstream 19707 25675568 ~ 25707676 (-) True AMCG00001341
AMCG00001336 mRNA downstream 142826 25577688 ~ 25584557 (-) True AMCG00001336
AMCG00001327 mRNA downstream 447414 25275819 ~ 25279969 (-) True AMCG00001327
AMCG00001326 mRNA downstream 480733 25243645 ~ 25246650 (-) True AMCG00001326
AMCG00001342 mRNA upstream 16300 25750342 ~ 25762406 (-) True AMCG00001342
AMCG00001345 mRNA upstream 43390 25777432 ~ 25801381 (-) True AMCG00001345
AMCG00001343 mRNA upstream 67855 25801897 ~ 25815797 (-) True AMCG00001343
AMCG00001344 mRNA upstream 81796 25815838 ~ 25817520 (-) True AMCG00001344
AMCG00001346 mRNA upstream 225031 25959073 ~ 25992808 (-) True AMCG00001346
TU163903 other downstream 284752 25441613 ~ 25442631 (-) True G130779
TU163894 other downstream 304029 25421924 ~ 25423354 (-) True G130771
TU163889 other downstream 313536 25389227 ~ 25413847 (-) True G130767
TU163851 other downstream 449986 25275802 ~ 25277397 (-) False AMCG00001327
TU163843 other downstream 480931 25222896 ~ 25246452 (-) False G130735

Expression Profile