RNA id: AMCG00001340


Basic Information

Item Value
RNA id AMCG00001340
length 3316
RNA type mRNA
GC content 0.42
exon number 13
gene id AMCG00001340
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25708851 ~ 25716069 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCACTTATAAGCCACCGTAATATTTGCCCACACTGAAGTCAAATatcaattatttactttttgggCAAATATGATTTAAGATCAacgaaaacattttttttttacatatgtatGACCTACACGACACATGCTGAATAGTTATCTTAAGTAAGCCTCAGAGACGGTGTTACTGTTTACCTTCGTTATTCGTCAAATTAGGACACAACAGAACGAGTCGAAGAAAAGCTTTAGTTTAAGTTGCTAAGTCAGTAATAACGTATCTAATAAATTGAGAAGTCATGTCACATTgaattattgattattttaaaaagactgatttcaaatgacagatcggaaaaagaaaatctacaataaaattaaaacgcGCTTTCTTTAGCGCAAGACCTGACTAATCGATGGCTCGGGCTGAAATCGGTTTCTCTGCGATTGACACGAAGTACTAGCAGCACAACGCATGCTGGTTAGGGAGACGCATGGTGGgttgtatttagttttacagTGGATTGAGAACTTCGGGAAATAATCAAAAGGCatttataatcaaaaacaaGTACGTTAAGGCTGTCAAAATGTCTCAGTTACAAGCCAGGTtcttcacagaaaacaaaaaGTATTCAGTAGATGATGTGCCATTTTCAATCCCAGCCTCTTCAGAAGTTTCGGACCTGAGCAATGTCATCAACAAACTGCTGGAAGCTAAACATGAGGATCACAAACACGTGGAGTTTGATTTCCTCATCAAGGGCCAGTTCCTTCGGCTGTCTCTGGTCACCCACATGGATACAGAAAGCATTTCTACGGAAGAAGTGGTTGAGATCGAGTATGTGGAGAAGTGCACGGCCCCCCAGCCTGAGGAGTGCGTGATGCATGATGACTGGATCAGCGCGGTGGAGGCGGACAGCGAATGGATCTTATCAGGCTCCTATGATAAAACAGCTCGGATCTGGTCTCTGGAAGGAAAGGCAGTCATGACTATCGGCGGACACACAGAGGTGGTGAAAGATGTGGCCTGGATTAAGAGAGACGGGCTGTGCTCCCTGCTCCTCAccgcctccatggatcagaccgTGGTGCTCTGGGAGTGGAACTCGGAGAGGAACAAGGTGAAGGCCAGGCACTGCTGCCGGGGCCATGCGGGCAGCGTGGAGAGCGTCGCCGTGGACAGCACCAGGACCAAGTTCTGCAGTGGTTCTTGGGATAAAATGCTGAAAATCTGGTCTGCagTTCCCACAGATGAAGAAGACGAAATTGAAGAGCCACCAAACAGGCCGCggaaaaagcagaaaactgaaCAGATGGGTCTGACGCGGACTCCTCTGATGACTCTGTCCGGGCACAACGAGGCCGTCTCCTCGGTGCTGTGGTCTGACACAGAGGAGATCTGCAGTGCATCCTGGGATCACACTATCAAAGTATGGGATGCAGAGACCGGAGGACTCAAGTCTACATTGACGGGCAGCAAGGTGTTCAACTGTGTGTCCTACTCCCCGCTGTGTAGAAGACTGGCCTCGGGCAGTGCAGACAGACACATCCGCCTGTGGGACCCTCGCTCTAAAGATGGCTCCCTCGTGCTGCTCTCGCTCACCTCCCACTATGGCTGGGTGACGGCGGTCAAGTGGTCCCCCACGCAGGAGCAGCAGCTCATATCTGGCTCCCTGGACAACGTTGTGAAGCTCTGGGACACGAGGAGTTGTAAGGCTCCTCTGTATGACTTGGCTGCTCACGAAGACAAGGTCCTCTGTGTGGACTGGACTGAAACAGGGTTGCTCCTGAGTGGAGGGGCAGACAACAAGCTATACACCTACAGGTATTCAGCATATAGCTCAGATGATGGAGCCTAAAGTTGCTCTGTCTTTCTCCTCACCACCCTACTGAGAAGAGCCTTTTGACTGGACTGTCTGCTGCTCAACCTGATAAAGACCCTTCTAAAAATTAGACCTATGGACTGGccagcctttttttttattattttactacttTACTGTTCTCATTAcagcacagttttttttttttcctttatcaaCACCTCTATAATGGTGCATTGTGTTGTTCACACAATTTCTGAAGCATTCCTGCATCCAAGAAATGTATAAAGATTCAAGACTAGCTGTGTATGCGGTCAGTTATAAACGTAGTGATAGAGATGGGTCTTGTCttatgttattgtattactgATAAGTCTCTAACACGCTAGTAATAGTAGACAATCACATTTtcacagtgcattttaaaagtgtcaCAATTGCCAAGCTTTAAAGGATTGAGTTAAGTTAGTAAGTCATTGCTTCACTTGTCAAGACAATTGCAGGATCGGATAGGATGCATTGATATTTTtggttgaaattaaattgtagtTTCTGTATTGGTCTTGAAGGTGGACTCTATTTGCAAAGCATCAATGGTAGATTAATCTGCATCCTACATATTTATTGCATGCTTACTGCACCATGAttggaatgtatttttatactgtGGTCAGAAATGTAGAACTGCATGTGTAAGATTGCATGAAATGTCAAAATGCATAGAGAGATGGGATGTTTGCAGTTTTAGTCAAGGAAACTATGTATgctgtaaattgtattttggaacAGTGCATTtgtaaagatttgtattttaaacagattgttttcctattattatttttttgtggccTTCATAATCCTTTTCTTTTGGTTCTCACCCAGACTCTTCATCTGCGTTTTCTGTATGCAGCCCCTTTCCActggttgtttttaaataaaatatcaaaactgCTGGTATAattatattgcttttataaTAACAGCTTGCAGGGTGATCACACATTTCCATCTGTGAAATAACTAAAGAGTAATACAAACTGTATTCAagtttttgatgtttttgtttattacagaTCTTAAATTATCCATTGTGTAAACttttataacaaattattttacaacTGGAACAAGCATATATTTGCTCTTGCTTGTGTGATTGCAAGTATGTTGTATATGTCTCTGAAACCAgaaagaaacatacattttgtaataaagaaTCACCCCAATATGTAAAATTTGGTGAAGTGTAGTTCATAGTTGCTGAAAAAACTGATTGGCAACCATTTTTCCAAGTTGAGTCACTTTAATACTTGCACTCTGACCAGCTCTACAAGTTCAGCACAGGCTTTTACATTTGCcctttaactgaaataaatgtactgaaCATTAAAACTCACTCGTTTTATATAAGTGATTAACTGCTGCTAGGCAATATAAggtacttttttaatgtaaataactttttaaaaccTGTTGTGAGTCTTCTTAAATAGTGCAATAATATCACCG

Function

GO:

id name namespace
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0008283 cell population proliferation biological_process
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0070545 PeBoW complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0043021 ribonucleoprotein complex binding molecular_function

KEGG:

id description
K14863 WDR12, YTM1; ribosome biogenesis protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163905 lncRNA downstream 257777 25449256 ~ 25451074 (-) True G130781
TU163902 lncRNA downstream 268025 25437645 ~ 25440826 (-) True G130778
TU163900 lncRNA downstream 273732 25434916 ~ 25435119 (-) True G130777
TU163898 lncRNA downstream 277184 25431443 ~ 25431667 (-) True G130775
TU163892 lncRNA downstream 287507 25421029 ~ 25421344 (-) True G130769
TU164065 lncRNA upstream 409742 26125811 ~ 26132592 (-) True G130921
TU164092 lncRNA upstream 572479 26288548 ~ 26293255 (-) True G130944
TU164143 lncRNA upstream 771124 26487193 ~ 26487686 (-) True G130980
TU164183 lncRNA upstream 914167 26630236 ~ 26630628 (-) True G131015
TU164184 lncRNA upstream 939942 26656011 ~ 26656252 (-) True G131016
AMCG00001341 mRNA downstream 1175 25675568 ~ 25707676 (-) True AMCG00001341
AMCG00001336 mRNA downstream 124294 25577688 ~ 25584557 (-) True AMCG00001336
AMCG00001327 mRNA downstream 428882 25275819 ~ 25279969 (-) True AMCG00001327
AMCG00001326 mRNA downstream 462201 25243645 ~ 25246650 (-) True AMCG00001326
AMCG00001323 mRNA downstream 485340 25219102 ~ 25223511 (-) True AMCG00001323
AMCG00001339 mRNA upstream 11314 25727383 ~ 25734042 (-) True AMCG00001339
AMCG00001342 mRNA upstream 34273 25750342 ~ 25762406 (-) True AMCG00001342
AMCG00001345 mRNA upstream 61363 25777432 ~ 25801381 (-) True AMCG00001345
AMCG00001343 mRNA upstream 85828 25801897 ~ 25815797 (-) True AMCG00001343
AMCG00001344 mRNA upstream 99769 25815838 ~ 25817520 (-) True AMCG00001344
TU163903 other downstream 266220 25441613 ~ 25442631 (-) True G130779
TU163894 other downstream 285497 25421924 ~ 25423354 (-) True G130771
TU163889 other downstream 295004 25389227 ~ 25413847 (-) True G130767
TU163851 other downstream 431454 25275802 ~ 25277397 (-) False AMCG00001327
TU163843 other downstream 462399 25222896 ~ 25246452 (-) False G130735

Expression Profile