RNA id: AMCG00001345


Basic Information

Item Value
RNA id AMCG00001345
length 1839
RNA type mRNA
GC content 0.56
exon number 12
gene id AMCG00001345
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25777432 ~ 25801381 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGACCCCAGCCTATCTCTTCTGAGCCGGGGATGTGGCCAGTTGGTGAAGACGGAGATGGACAGTGACGAGGGGAAGGTGGAAGTCTACTTCGAACCAGAGGATTATTTTAACTGGAGGTCCCACCACGCGTTTTTCCACCTGTCCCGCATTAGCGCAGGACGAGGACTTGAGCCAGTGCCTCCCAAAACATACAGCACCAGGAAAGGGCCTCTCATCTTGTATTCAGAGGACCTGGCTTTGTCCTCATGGCACTCTGGGGGGCTGGACAGGAAGAGGAGAGCCACCCGGCACTACAGACAGGAAGTGGAGCTACAGCTTCGTACCCTCAGGGATTTAACAGGAGCCATCTTGGCCTATGGGAATAAACAGGAAGGTCCAGGCAAAGGGCAGCCCTTCTTGCGCTTCCTCACCGACCCCCAGGAAGAGCAGGCCGAGAGACAGGTCCGCCCGGGCTACTCCGCCAAGCGCTACCTGGCACATCTCTCCCACACCTGGCATCCCCACGGCCAACCTCTCTCCAGCACAGATCTGCTGTCAGGTGTTCCTGGTGATCCCTCAGTGCCACATGATGACCCACAGACTCCATCCCTGTACCATGAAAACCAACTGGACCTGTCCACACCACCCAGGCCTTATAAAGTTCCCCTCGGTGTCCTACCAGCTATTCCTGAGGAGAACACCAACCCTCTTTCTAAAGAGCAGAGCCACGAGACGGAGGATGTGGTGTGGAAGAGGGCTGGGCGGCGTCGGAGGACGGAGTTTAGGTTCATGACCGAGTCCCTCAGGGCAGGGCTGAGCCCGGTACCCGAGACTGAACACCTGTCCCTTGGGGAAGACACTAGAAACACTGAGGAGCCGAAGGAGGCCCTGGGCAGGGCATTTGAAGGGAAGCAAAACGAAATGCCTAAGGAAGCCCACAGCTCCATGAAAACAGCCTCCATTGATTCCTCCTGGCTCCACAGTGAGAAGTCCCATGTCACCTATTACGGGGGCACCCTGGCTGGCGGGAGGAGAAACCCCACCTCGAAGTCAAGCCGAGTGGAACAGAAAGGACTGGACCCTTGGGGACTCAGCGAGGAACTGCACTTCCCTCCTATACCATCAGGCATGTGTTTTGGGTTGGGCCCGGTTAAGGAAACAGACACGGTAGATGTTTCCCATCATGAGGATGCAGGCAAGATGAGAGATGACCTTTCTCGAAGCCCCCGGCAGGAAGTGGAGGAAAGATGTGAGAGTCCATCTGCAGATAAGATGCCCAGGGCCCTTCCTGTACTGCGGCCCAGAGAGATAGACCTGGACTGGTTTGGGCAGAGACTCGAGCCAGACAAGACGGAGCCAGACGTGGGTCATCACCAAGAAGACTGCTTCTCGTCCGGCATTTTACCTCCCATCATCGGAAGGAAGGGCCCGGGAAACCAGAGACCCATGGCATCTTTCAGAGTCCACAGCAAAGACCCCCACGAACCCCAGACAGGCATCATCAGGGGCAGCATTCCCGAGGTCCTGAGAGaaagctatGAAGGCAATTCAGTGGGAAGCCTCATCATGGGTCCTGACGGAGAGATCTTGCGTTTGTCTCTTTTGGACCCTCTTGGCAAAGGCGGCGAGGAACTAGTCCTTGATGACATCACCCGAAAGGAAGCGCTGCGCTCCCTGTCTTCTGATGTCATCATGGGACAAGCCTGGACAGTATTTCTGCAGCCAGGCGGagTCAGGACTCATTCCAATTTTGAGGCCTTCACAGTTGATCTGGTAACAGGGCCTGACCGACCTCCAGCCAACTGTGCCGAGGAGCCAGGAGACATGCGGCTCCCAACAGGTTGTTTACATTGA

Function

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163905 lncRNA downstream 326358 25449256 ~ 25451074 (-) True G130781
TU163902 lncRNA downstream 336606 25437645 ~ 25440826 (-) True G130778
TU163900 lncRNA downstream 342313 25434916 ~ 25435119 (-) True G130777
TU163898 lncRNA downstream 345765 25431443 ~ 25431667 (-) True G130775
TU163892 lncRNA downstream 356088 25421029 ~ 25421344 (-) True G130769
TU164065 lncRNA upstream 324430 26125811 ~ 26132592 (-) True G130921
TU164092 lncRNA upstream 487167 26288548 ~ 26293255 (-) True G130944
TU164143 lncRNA upstream 685812 26487193 ~ 26487686 (-) True G130980
TU164183 lncRNA upstream 828855 26630236 ~ 26630628 (-) True G131015
TU164184 lncRNA upstream 854630 26656011 ~ 26656252 (-) True G131016
AMCG00001342 mRNA downstream 15026 25750342 ~ 25762406 (-) True AMCG00001342
AMCG00001339 mRNA downstream 43390 25727383 ~ 25734042 (-) True AMCG00001339
AMCG00001340 mRNA downstream 61363 25708851 ~ 25716069 (-) True AMCG00001340
AMCG00001341 mRNA downstream 69756 25675568 ~ 25707676 (-) True AMCG00001341
AMCG00001336 mRNA downstream 192875 25577688 ~ 25584557 (-) True AMCG00001336
AMCG00001343 mRNA upstream 516 25801897 ~ 25815797 (-) True AMCG00001343
AMCG00001344 mRNA upstream 14457 25815838 ~ 25817520 (-) True AMCG00001344
AMCG00001346 mRNA upstream 157692 25959073 ~ 25992808 (-) True AMCG00001346
AMCG00001354 mRNA upstream 498352 26299733 ~ 26360373 (-) True AMCG00001354
AMCG00001358 mRNA upstream 697912 26499293 ~ 26499996 (-) True AMCG00001358
TU163903 other downstream 334801 25441613 ~ 25442631 (-) True G130779
TU163894 other downstream 354078 25421924 ~ 25423354 (-) True G130771
TU163889 other downstream 363585 25389227 ~ 25413847 (-) True G130767
TU163851 other downstream 500035 25275802 ~ 25277397 (-) False AMCG00001327
TU163843 other downstream 530980 25222896 ~ 25246452 (-) False G130735

Expression Profile