RNA id: AMCG00001349


Basic Information

Item Value
RNA id AMCG00001349
length 1581
RNA type mRNA
GC content 0.50
exon number 14
gene id AMCG00001349
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 26100278 ~ 26117478 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACAGCGAACAACAGCATGGCCGGCCAGTGATCGGCCTGTGTGTTAATCTCTACTTTGTAATGCAAGTTTGTAGTGTGTAAAGATAGGAAATCGCCAAAAATAAACGATGGAAAGAGAAAAGTCGAGGGTCCAAAGCCCACGCAGGAGGGAGCTGCCAGCCACGCTCCAGCCAATGGCACGTGCCCCCCGAGCTCTACCACCAATGCCAAGCCAAGACACAGGAGatgaGTTGCCTCTAAGCAAACCCAAAAAGAAGAGGAGCAAACCAACGAATGGAGTAGGAGACTCAGATGAAACTGGCATGATGCCGGGCAGCCGCAGACAGTCGGAGAGCAGAGAGCCGCTGACCCCCGAACCCCAGGACGTGCCCCcgcagaggaagaggaagaagaagaagttgCAGACGCCAGATGCAGAATCCTCCTTCATGCACCACACCTCCTCTGATCCCTCCGCTCAGCAGGACCTGGACAATGGGGATGGAGTGGAGGCCATCAACGGGGAGGAACTGACTCGCAAGCCCAGAAAGAGAACAAAgaaaACAAAGGGGACTGAGCTGCAGTATGCCAACGAGCTGGGTGTAGAGGAAGATGACATAATCACTGACGTCCAGCCACCTATTCCTCAGCATTCCCTGTTCTCAGCTCCTCTGGGCAACAGCCAGCCCGTCGGCAAAttgtttgtggaaaaaaatcGAAAATTCCAGGCCGCAGACCGGTCAGACTTCAACAGACATACAGAGGAGGTGGACGACTACATGGAGGTGAAGCCCCTGTGGACAACCAGAGATGTGGCCATGAAGGTGCACCGGGGATTCAGGGTCATCGGCCTGTTTTGTCATGGCTTTCTGGCGGGTTATGCGGTGTGGAACATTATCGTGGTGTACGTGCTGGCAGGGAACCAGCTCACCACCCTCCCCAACCTCCTGCAGCAGTACAAGACCCTGGCCTACCCTGCGCAGTCCCTGCTCTACCTGCTGCTGGCCATCAGCACGGTGTCCGCATTTGACCGGGTCAACCTGGCCAAGGCGTCAATGGCACTGCGAGGGTTCCTCACCCTTGACCCAGTTGCTCTGGCTTCGTTCTTGTATTTTGCAGCTCTGCTCATGTCTTTGACCCAACAGATGACCAGCGACCGGATAAACCTTTATACACCTGACAACGAAACCTTATGGCCTCCTGGCTCTGAGCACAACATCCTTCAGTCGTGGATTGCGGTCAATCTGGTGGTGGCTCTCCTGGTTGGACTGGCCTGGGTGTTCCTCTCCACCCGACCAGAGGTGGATTACACAGAAGAGGATATGTTTGGTTTGGATGTTGAAGAATACCCAAAGCAAGAGGAAAGACATGAAATTCAAGCCTgaactgattattttttattttttatatgtaatctACATTTGTTGTATTACAAAAATCAAATGACATACTCTCATTCAATGTTTCTaagaaatctatttttttattgtgttttattaagtatatatgtgtatatatttatatatagatatccaTTTTTAACTTGAACTGTCTTGCacaatgtatctatttttaaaaatacagtgggACCTGTGTGAAAGA

Function

GO:

id name namespace
GO:0060027 convergent extension involved in gastrulation biological_process

KEGG:

id description
K22765 TMEM237; transmembrane protein 237

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164023 lncRNA upstream 37585 26061148 ~ 26062693 (+) True G130884
TU163974 lncRNA upstream 350777 25735555 ~ 25749501 (+) False AMCG00001337
TU163968 lncRNA upstream 370441 25727853 ~ 25729837 (+) True G130839
TU163941 lncRNA upstream 424796 25675217 ~ 25675482 (+) True G130817
TU163916 lncRNA upstream 466702 25633234 ~ 25633576 (+) True G130792
TU164097 lncRNA downstream 179229 26296707 ~ 26335290 (+) True G130948
TU164185 lncRNA downstream 653402 26770880 ~ 26771161 (+) True G131017
TU164189 lncRNA downstream 675793 26793271 ~ 26793553 (+) True G131021
TU164243 lncRNA downstream 861297 26978775 ~ 26980289 (+) True G131072
AMCG00001350 mRNA upstream 3265 26075570 ~ 26097013 (+) True AMCG00001350
AMCG00001348 mRNA upstream 30768 26021981 ~ 26069510 (+) True AMCG00001348
AMCG00001337 mRNA upstream 350898 25739124 ~ 25749380 (+) True AMCG00001337
AMCG00001338 mRNA upstream 374599 25718904 ~ 25725679 (+) True AMCG00001338
AMCG00001333 mRNA upstream 426511 25663865 ~ 25673767 (+) True AMCG00001333
AMCG00001351 mRNA downstream 5365 26122843 ~ 26140826 (+) True AMCG00001351
AMCG00001352 mRNA downstream 70411 26187889 ~ 26189870 (+) True AMCG00001352
AMCG00001347 mRNA downstream 113808 26231286 ~ 26268997 (+) True AMCG00001347
AMCG00001353 mRNA downstream 166982 26284460 ~ 26290848 (+) True AMCG00001353
AMCG00001355 mRNA downstream 327603 26445081 ~ 26453330 (+) True AMCG00001355
TU163730 other upstream 1508803 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 1645893 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 2933622 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 4823399 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 5021408 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 739121 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 834430 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile