RNA id: TU157308


Basic Information

Item Value
RNA id TU157308
length 1604
lncRNA type inter_gene
GC content 0.41
exon number 6
gene id G125515
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 121280 ~ 127663 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCCGGACATGAGGTGGTGCGGACGCCTCTTCCTGCGAGGGTCTTCTGGACAGAGAAGGACCCTAATCTTCCGTCACAGCAAGAGACCCAGACCGCAGCATCCGAGCAGCCCGTAGAGGACGAGGATCCTGGACAGGACGGCTCTGAGCATCACCCCGCAGatgcTGCGGAGGTGCCGAGCCAGGCCAGACTGTCCAGGTGGAAACGCCTCTCCAACTTCTTCCTCCGCCTGTGTTGCTGCAGGGCGGATGTGAGGGAGTAATGCCAGGAAGTATCCCCtagcgtgtgcgtgtgcgtgcgtctTAGAGAATACTATGTagtatataagtTTCAGCatctctgtatatattaaatactatatactgagacgcatataatatatactgagatgctgagacttGTACAATATACTACATACCGAGGcgcatataatatatactgagatgctgagacCCATACAATATATGCTGAgatttatatactatatactgagacgcatacaatatatactgagatgctgaaACTTGTACAGTATACTACATACCGAGatgcatataatatatactgagatgctgagacCCATACAATATATGCTGAgatttatatactatatactgagacgcatacaatATATGCTGAGACTtgtacagtaagggaaaaaagtatttgatctcctgctgattttgtacatttgcccactgacaaagaaatgatcagtatCATTTTAagggtaggtgtattttaacagtgagagacagaataacaacaaacaaatccagaaaaaaacgcatttaaaaaaagttataaattgatttgcatgttaatgagggaaataagtatttgatccccctatcaatcagcaagatttctggctcccaggtgtcttttatacaggtaacgagctgagattaggagcactctcttaaagggactctcctaatctcagctccttacctgtataaaaaacacctgtccacagaagcaatcaatcagattccaaagaTGCTGAgatttatatactatatactgagacgcatacaatatatactgagatgctgagacttgcatactatatactgagacgcatataATATATAGTGAGATGCTGAGACTACATGCAGTTAAAAGGGATGCCAAATGGCTAAACTCGACTCTTGAAACAGAGAAGGTCGTTAAGAGGCTTCTGGAGATGCCTGAGCTCAGACCCCCAACCCAACAGAGCCACTTAAACTCCTCTTGAGGAGACCTAGGAGTAATAAAATGACTGATATATGCAATAAGCTCACAGCATTTTACACAATTCATTAAGCAgtgtgaaatatgaatatattgcaGACCCTATTTCTGTtgctttgtatgttttgttacaactggatatagaaaatacataaagcatttcgcaaatttcaacatttgtagCGAAATAGTCAAATCTATCGCATCGATATAATGTCATGTATTGCAGTGcactgtgcatgtttcaacaCCATTGTGCATTACTGAGATGCAGACAATGAGTCTTATACCCTCAGGACTCTTGTCTTGTGGAAGGACCGTGTAAAGTGTTTGGTGAAGCAAGTTCTTAATAAAACGTTCAAATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157282 lncRNA downstream 28625 92283 ~ 92655 (-) True G125498
TU157281 lncRNA downstream 29995 91051 ~ 91285 (-) True G125497
TU157403 lncRNA upstream 248157 375820 ~ 376770 (-) True G125578
TU157417 lncRNA upstream 281952 409615 ~ 410817 (-) True G125591
TU157449 lncRNA upstream 395858 523521 ~ 527501 (-) True G125622
TU157452 lncRNA upstream 470321 597984 ~ 598335 (-) True G125625
TU157474 lncRNA upstream 759491 887154 ~ 887476 (-) True G125642
AMCG00000686 mRNA downstream 1382 112162 ~ 119898 (-) True AMCG00000686
AMCG00000684 mRNA downstream 10756 100069 ~ 110524 (-) True AMCG00000684
AMCG00000685 mRNA downstream 31035 87659 ~ 90245 (-) True AMCG00000685
AMCG00000682 mRNA downstream 44944 66652 ~ 76336 (-) True AMCG00000682
AMCG00000689 mRNA upstream 3970 131633 ~ 142509 (-) True AMCG00000689
AMCG00000688 mRNA upstream 18116 145779 ~ 192328 (-) True AMCG00000688
AMCG00000687 mRNA upstream 71353 199016 ~ 244177 (-) True AMCG00000687
AMCG00000690 mRNA upstream 179818 307481 ~ 329049 (-) True AMCG00000690
AMCG00000692 mRNA upstream 204560 332223 ~ 338261 (-) True AMCG00000692
TU157359 other upstream 66981 194644 ~ 213612 (-) False AMCG00000687
TU157704 other upstream 1259180 1386843 ~ 1422410 (-) True G125814
TU157731 other upstream 1366319 1493982 ~ 1500661 (-) False AMCG00000719
TU157772 other upstream 1634599 1762262 ~ 1767476 (-) False AMCG00000731
TU157782 other upstream 1701884 1829547 ~ 1831310 (-) True AMCG00000741

Expression Profile