RNA id: TU157403


Basic Information

Item Value
RNA id TU157403
length 315
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G125578
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 375820 ~ 376770 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttggtgttcagtgtgtggtgttgagcctgtgtgtgttgttgccaGGGGATCATGCACGACTCCAAGCCTGTCTTCACTGCACAGTTCCACCCCGAGGCTAAAGGCGGCCCGACTGACACTGAGTTCCTGTTTGATGCCTTCATATCCCTCATTAGGAATGGTAAGGAGGTCAGCATCGTGTCTGTGATGCCCAGGAAAGAGCAGCCAACCAGACGAGCCCAGGTATAACCGCACTGTTCTGCACAACTACTGTGTGTGTTCCTGtcttacagtgtgtgtgttactattataacatacagacgggtgacaaatg

Function

GO:

id name namespace
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process

KEGG:

id description
ko00910 Nitrogen metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157308 lncRNA downstream 248157 121280 ~ 127663 (-) True G125515
TU157307 lncRNA downstream 251546 121280 ~ 124274 (-) False G125515
TU157282 lncRNA downstream 283165 92283 ~ 92655 (-) True G125498
TU157281 lncRNA downstream 284535 91051 ~ 91285 (-) True G125497
TU157417 lncRNA upstream 32845 409615 ~ 410817 (-) True G125591
TU157449 lncRNA upstream 146751 523521 ~ 527501 (-) True G125622
TU157452 lncRNA upstream 221214 597984 ~ 598335 (-) True G125625
TU157474 lncRNA upstream 510384 887154 ~ 887476 (-) True G125642
TU157532 lncRNA upstream 892461 1269231 ~ 1307353 (-) False G125685
AMCG00000691 mRNA downstream 9704 354488 ~ 366116 (-) True AMCG00000691
AMCG00000693 mRNA downstream 27410 339733 ~ 348410 (-) True AMCG00000693
AMCG00000692 mRNA downstream 37559 332223 ~ 338261 (-) True AMCG00000692
AMCG00000690 mRNA downstream 46771 307481 ~ 329049 (-) True AMCG00000690
AMCG00000687 mRNA downstream 131643 199016 ~ 244177 (-) True AMCG00000687
AMCG00000696 mRNA upstream 154271 531041 ~ 536858 (-) True AMCG00000696
AMCG00000697 mRNA upstream 165286 542056 ~ 544156 (-) True AMCG00000697
AMCG00000700 mRNA upstream 214075 590845 ~ 612323 (-) True AMCG00000700
AMCG00000698 mRNA upstream 266843 643613 ~ 647413 (-) True AMCG00000698
AMCG00000699 mRNA upstream 302244 679014 ~ 680483 (-) True AMCG00000699
TU157359 other downstream 162208 194644 ~ 213612 (-) False AMCG00000687
TU157704 other upstream 1010073 1386843 ~ 1422410 (-) True G125814
TU157731 other upstream 1117212 1493982 ~ 1500661 (-) False AMCG00000719
TU157772 other upstream 1385492 1762262 ~ 1767476 (-) False AMCG00000731
TU157782 other upstream 1452777 1829547 ~ 1831310 (-) True AMCG00000741
TU157989 other upstream 2075098 2451868 ~ 2457883 (-) False G126017

Expression Profile