RNA id: TU157449


Basic Information

Item Value
RNA id TU157449
length 3981
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G125622
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 523521 ~ 527501 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTCTCTCTTCCCCGCCATGAAGGAACTTTAATGCCATTTAATGGATGTATGCCTTGAAAATAGAGAGAATTGGGACCGCCCTGCCCCACCGGGAGAGAGCAGTGTTGACAGAACCAGATTTGGGGCCGTGAAACACGAGCCTCTCGGACCTGAGGGAGAATGGCACATCCAGCCGGGAGTCTGGTCTGTGGTCAGCTGACTCGGAGAAGGCAGAGACGTTACCACTGCGCTGTGTGCGATCGTGGGGGGGTGGTCCCACAGGCGGCCCTTGAAGGAGTTGTAAACTATGTAGCAAACACTGATCCAGTGTCCAGTGGGCTGTGTTTCATTCAAACCTAAATAACATTGAAGCAGCTATTGAGGAACAACTTGACCAAGACCTGCATTCACcattgggggcgggggggggatttaataaataaatatgtgcagtATTGATCTATCAGCAGCCGCCTTTATCGATGCGCTGCTGGACGAAGCCCCTCCGAGGTGTTTCTGAGCCGCATCTCTTTCGGAGCTCCTGGTTTCATCCCCCCGTCCTATCTTTCTCCTCGGTCTTTATTCGTCTCTTGGGATGCGTTCTGTAGCTGCTCGTGTCCATCTCTGGACGGTCCTCCTGGCCTTGTGTCCGAATCACTGGCATTTTAACACATTCACCCTTTCGGTGATGTCACACACTTtagtttgttctctgatccattgATTTGTGCGTTTGTCTCTTCCTGTtactcccagcatgcattttTCTGTGCTTCTTGGTGTCATTTGCAGTTTCCATATTATATTTGCTTTTAGTTACCAggagatatagatatagatggaTATATATGGAGATGTATACAAACTGGACGGTGGTGCAGACTTGCTAATAAGAGGAGTCCATCGTGATCTCGTCTGTTCCGGCTCTGTCCTCCTccgtgtctcagtgtgtgttgGAGAAAATCAGATCATTGATCCCAATCAGGGCTCATCAGCCCAGAGAGCGCGGACCCTTACTGGATCGGTCGTGACGCATATCTGTGATCTCAGCACATGCTTTTCTAAGACACTATTGACAACAGAAAGACGGGAGTTGATTTGTGTCAATACAATGGACTGTTGGTGTTGTGTCCCGGAGCTCTTGTGAGCCATGGCTTCCTGCCTGACTGTTAGGGGCTGGGGGGGTGATGAGATGAGACTTATTGTGCGTTGTGTCCAGTGCGCATGAGCAGTGTTGTGACCGGATCTGATTCCAGGTCCGTAAAAACAGACAAGCAGAACTGTGACTTGTGAGGACTTTCACTTAACTGCAGCTttgatctctctccctctctttctccctctctctgtctctctcctccctctgctCAAGTCAAGCCGTTTATTCTCAGTCACAGCCCAGTTCTGACTCACAGCCCCCCGTTCACTCGTCTGTCAAACAACCGCTAACGACACACAAAGCCCATTAACACCGAGGCCCGTGAGCGACAGCCGGGCGACGGCCTGATCGCAGGTGACTCTGGCGCTGGTTCTGTGTAATTGGGTTCCGCGCTCTCGCCTCGAGCCCGCGGGTGTTTTAAAGTCCCTGAGCTCGGCACGGGATGGTGCGTGGCCCCTCAGAGACGGGGCCCGGAACGTTTCTCATGCTGTTAAACACACCGACGTAACTATTTTTATTCGGGGCCCCAGACCCCTCAGAACcctcagtttaattaaaaatacggTGATATATCAGAACaactgtaatataataataataataataataataataatatcggAGCTGGGCTGTGTGTGAGAGGATTGGCTTCCTTGCAGGATCcctctttgtctgtctctcttcctctccctctgctcactccttctctctctccctctctttgtgTCCTTTGCCTGTGCATACGGATCAGTCTAATGAACCCAGGTAGGCAGACGGGGAACTGAAGGCAGCTGAAGTTGATTAATCTCGTTTTGTCACAATGGCCTCTTCGCTTTCCTCTCCAGCCGACACTCCTTCGTGTGGCCGAGAGTCGCCCCCAGTCCTCCGCCCGTCGCGTCGCTCTGTCTGTGCGTCTCCGCCGCGTCTTCATTCGGCGTCTCGTGTCTCACCTTCTCTTCTCTGTATCTTTAAGACACGCTTTACTGATTTctcttatacatttttatcttATAAATAAACTATAGACACATAAAGTGCAACGTGGTTTGCTTTAGccattttttggttgttgttgttccagATGTGTACTGCTTGCATTGTATTTAGTATCGTCACTTTTCCTCATGTTTAATGACCTTAGTGCACAGACGCTATTACAGTATCCCATGTGAGTATCATATATATTGtggttatgattattattatcattattattattattattattaacacactgATGTACACGGAGGAAGCACACAcgttttctctcttctctcttcttttgTGGTTTTATAAACAGAAGTTTGGAATAGTTGTTCCTCAAGATTTACTACTGTATGCTATCTGACAAATGTGAATAGTATTTTTATAGACTGCTGATGAACAGGCCAGGTGCGTTTGTAAATACGGGGAAAATGTTACTCTGGGTTTACGTTCTGTTTTCTCACCACAGAGTTGGTTTCTGTTGAACATACTTGTCTGTTTGGGATTTGATTGCCTCTGTATATACGCTGCTCTTCAGattgtgactttttttatttgaagcgCTCATGAATTTAGACATTTGACTTGTGATCCATGTTTAGCACAACTTGTGACCGTGTTTTACCTTCTGCACTCGCTCTCGTGGTAGGAGCTGCTCTGACTGTCTGTTGTCGCTTCCCTCTCATCTCCTCCCGTGACCCCCGCTGTAGCGTGTACTGAGACACTGTTGCAATACCGAGGACTGTACCGAGTCccgtctctttctctctggttCTCCTTCGCTCTCGGGAGCAGCGCGGGGCTGCCAGGGTCCTAGTTGCCTCAATTCTGAAATCACTCAGTGAACCGTCGAGTGGCTAAATTGAGCATCGTTTCCACTGCAGGGTTTACAGGGCTGACTGTGGCCCCCCGTGCCCCCCGTGCCCCCCTCTGCTCCCGAGAGCTGTTCCTGGAAAGGATCTGTCCTGAATTGAGTTCTTCCTTTACGCCCCCGTGTTtggtttctctctccctctttctaaTTGGTGCAGCTGGGCTTCGTTGCTGTGAGCCCCTCCCAGGTCTGACCTGTGGGTACGAGTGCCAACTGCAGGACTGACGGCAGCAGGAAGCACCTACCAGTGTTGCCAACACTCGAGAACCTCCCCAAACCCACCCCAGTCCCAAGGTCACCTGGCCAGCCCTCCTGCGTTGTTCATAGGGGCGAACATTTATGTTGATAGAAGTCTAGGGGAACCTAATTCAAGGCGATTGACGCCTGCAGATCATCTCTCCACTATGCGAGTGAGTGCCGAGGAGGAAACGTTGGGTGTGGGGGTCTCGGAGGTGACAGAGAGTGGCCCCTGACCCCAGAGTCTGTGAGGGGGATGTGGGATGAGGGCCTCGGGACACTGGGGTGGAAAGATGTGTAACTCACTCTAATTAAAATGCGATACTGTACAGTTATCGTACATTGCTgttactgacacacacacacagatgtgtgTCTAACGAAAGCCCCATCCCCCTCTGGCACTGAGAGAAGTGTTGGGTCGCGGTTCACTTTGGGCACGAGAGCGTCTGTGGAAAACAAGACGCCGCCTCCACTATTTGAACACGTTTGAATATATAACTACCTGAATAAACCCCGTCCCGTTTCCTCCTCTCCAGCGATCATGGCGCCTGAATCCTCAGTGACGTAATTAAGGTTTTTGGTTTTGCCAGCGTTTGTAATTCTGCCCAGATCTGCCGAGGTCAGCGTCCcaaatcccccccacccccggcaACACTGGTACctgttttctctttcagtgGACATTTGATCCCCCCTTAAGGCTCTAGCATTTAAATACTGTTCCGCATTTTTGTTACATGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157417 lncRNA downstream 112704 409615 ~ 410817 (-) True G125591
TU157403 lncRNA downstream 146751 375820 ~ 376770 (-) True G125578
TU157308 lncRNA downstream 395858 121280 ~ 127663 (-) True G125515
TU157307 lncRNA downstream 399247 121280 ~ 124274 (-) False G125515
TU157282 lncRNA downstream 430866 92283 ~ 92655 (-) True G125498
TU157452 lncRNA upstream 70483 597984 ~ 598335 (-) True G125625
TU157474 lncRNA upstream 359653 887154 ~ 887476 (-) True G125642
TU157532 lncRNA upstream 741730 1269231 ~ 1307353 (-) False G125685
TU157533 lncRNA upstream 742309 1269810 ~ 1307353 (-) False G125685
TU157535 lncRNA upstream 777082 1304583 ~ 1307353 (-) True G125685
AMCG00000691 mRNA downstream 157405 354488 ~ 366116 (-) True AMCG00000691
AMCG00000693 mRNA downstream 175111 339733 ~ 348410 (-) True AMCG00000693
AMCG00000692 mRNA downstream 185260 332223 ~ 338261 (-) True AMCG00000692
AMCG00000690 mRNA downstream 194472 307481 ~ 329049 (-) True AMCG00000690
AMCG00000687 mRNA downstream 279344 199016 ~ 244177 (-) True AMCG00000687
AMCG00000696 mRNA upstream 3540 531041 ~ 536858 (-) True AMCG00000696
AMCG00000697 mRNA upstream 14555 542056 ~ 544156 (-) True AMCG00000697
AMCG00000700 mRNA upstream 63344 590845 ~ 612323 (-) True AMCG00000700
AMCG00000698 mRNA upstream 116112 643613 ~ 647413 (-) True AMCG00000698
AMCG00000699 mRNA upstream 151513 679014 ~ 680483 (-) True AMCG00000699
TU157359 other downstream 309909 194644 ~ 213612 (-) False AMCG00000687
TU157704 other upstream 859342 1386843 ~ 1422410 (-) True G125814
TU157731 other upstream 966481 1493982 ~ 1500661 (-) False AMCG00000719
TU157772 other upstream 1234761 1762262 ~ 1767476 (-) False AMCG00000731
TU157782 other upstream 1302046 1829547 ~ 1831310 (-) True AMCG00000741
TU157989 other upstream 1924367 2451868 ~ 2457883 (-) False G126017

Expression Profile