RNA id: TU157452


Basic Information

Item Value
RNA id TU157452
length 352
lncRNA type intronic
GC content 0.49
exon number 1
gene id G125625
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 597984 ~ 598335 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtctgtttttgaatgttcccacattgtctcttcagccacatcgctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccgggtgtgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttggatcaagtccccatgtagtctcctctgttccagggtgaaaaggttcaggtcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157449 lncRNA downstream 70483 523521 ~ 527501 (-) True G125622
TU157417 lncRNA downstream 187167 409615 ~ 410817 (-) True G125591
TU157403 lncRNA downstream 221214 375820 ~ 376770 (-) True G125578
TU157308 lncRNA downstream 470321 121280 ~ 127663 (-) True G125515
TU157307 lncRNA downstream 473710 121280 ~ 124274 (-) False G125515
TU157474 lncRNA upstream 288819 887154 ~ 887476 (-) True G125642
TU157532 lncRNA upstream 670896 1269231 ~ 1307353 (-) False G125685
TU157533 lncRNA upstream 671475 1269810 ~ 1307353 (-) False G125685
TU157535 lncRNA upstream 706248 1304583 ~ 1307353 (-) True G125685
TU157528 lncRNA upstream 706629 1304964 ~ 1307353 (-) False G125685
AMCG00000697 mRNA downstream 53828 542056 ~ 544156 (-) True AMCG00000697
AMCG00000696 mRNA downstream 61126 531041 ~ 536858 (-) True AMCG00000696
AMCG00000691 mRNA downstream 231868 354488 ~ 366116 (-) True AMCG00000691
AMCG00000693 mRNA downstream 249574 339733 ~ 348410 (-) True AMCG00000693
AMCG00000692 mRNA downstream 259723 332223 ~ 338261 (-) True AMCG00000692
AMCG00000698 mRNA upstream 45278 643613 ~ 647413 (-) True AMCG00000698
AMCG00000699 mRNA upstream 80679 679014 ~ 680483 (-) True AMCG00000699
AMCG00000701 mRNA upstream 243936 842271 ~ 859811 (-) True AMCG00000701
AMCG00000703 mRNA upstream 537133 1135468 ~ 1148599 (-) True AMCG00000703
AMCG00000706 mRNA upstream 555975 1154310 ~ 1205897 (-) True AMCG00000706
TU157359 other downstream 384372 194644 ~ 213612 (-) False AMCG00000687
TU157704 other upstream 788508 1386843 ~ 1422410 (-) True G125814
TU157731 other upstream 895647 1493982 ~ 1500661 (-) False AMCG00000719
TU157772 other upstream 1163927 1762262 ~ 1767476 (-) False AMCG00000731
TU157782 other upstream 1231212 1829547 ~ 1831310 (-) True AMCG00000741
TU157989 other upstream 1853533 2451868 ~ 2457883 (-) False G126017

Expression Profile