RNA id: TU157522


Basic Information

Item Value
RNA id TU157522
length 2886
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G125684
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1304095 ~ 1307335 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGGCTCTGCCGCAGCCGCCAAGGGAGACTTCCTGCTGAGCAGCGAGCGCCTGATCGAGATCGTCACCAAGCTGCACCGCACCGCTGCCAGCACCGCCGGCCGAAGCCAGATCAGAGTGGACATCACCGACGAGTTCCTGGTCCAATTCAAGCAGGACAAGGTGTGCGTGAAGTTCGTCCCAGGCGGGCCCAGGAACGGCAACAGCGCCACCTGCAAGCGCAAGAACAACCGCCTGCTGGAGGTGTCCGTGCCGTCTCCATAGAGGGCCGCGCCGCGCCGGACTGTCCTCCTGACTGTgcaatcttttgttttttttttcttattattttaaatatttttatctCCATGTGCGCTGTCACACCACGACGACGAAGACGACACGAATCTGTGACTCAGTGACGAGACAAGAATGCCTTTTGGAagcatacgtgtgtgtgtgtatatatatatatatatatatatatatatatatatagatgtacaATCAGAATGTCTACGAAAGCGGAGGGATGGATGCTGGTGTGGTTCTGTACGATGTTTTAAACTTTCTTGTAGTGGCGAGAGTGAGTAGAGTGAGTTTccattgatgatgatgatgatgataacatGGTCTGTTCGCTCTCAGTCCTGGTGCTGCCGGGCCCCAGGCTGGGGGCCACAGCCTGCTGAGAGTACTGTGGGTACTGTGTGACGCAGCCGCCAGGACGGGGGTGTCGGAGGGGGTACTGGAGTCAAGTGAAGCCGTGGGAGTTTGTGAGGGGCTGGACTGGGCTCTCTTGCtgttcgtttttgtttttgtttgggggaGAGGTGTGATTTGCTTTGTGTACacaccacacacgcacacatacagacagacacacacacacagacagacacacacacacagacagacacagacacacgcacacacacacacacacacgcacacagacacacgcacacacacgcacacacacgcacacacacacacacacacagacagacacagacacacgcacacacacacgcacacgcacacagacacacacacgcacacagacacacacacgcacacagacacgcgcacacagacacgcacacagacacgcacacagacacgcacacagacagacacacacacagacacacacacagacacacacacacacacacacacagacacacacacacacacacacacacacagtcttacATTCGAAGCTCACTCGCTCACCCCACACCTGTACACCAGTGAGGAGCAGGCAGGCTGCCGTGTGTCGTGCTGTCGGACCGTGTGTGTCGGGGCTGTCCTCCACTGAGAGCCTCTCGAGCCTAAAGCCAAATTTTGAATACTCGCCCTCTTCATCTCTCCGGACGGAGTGAATGCCAAAACACGGGGCTCTTTCCGAACAGGAGCCCCGTCCGGACGGACCCCATCCCAGACCGTGATCTGCGGCGGTGGTAGAGTCGAGCACATTTCCGTTCACTTTCCCAGCCCCCGTTTGTAGTGCAGGATTTGTTTCCGTGCTCAGTCCTCATCAGCCGATTCCCGTCTCCCAGTCCCTTCTCTCTGGCCGGCGAGCGGCTCTGAGCAACACAGAGACGCACGTTACACAACAATAGACAAACCTGAGTCctgaattctgtattttttggacaggggaggtggaggggggatTTGTTATCGTTATTCTTATCGATTATAATTTCAAGAATGTCCTGGGATCCCTAAACACGGTGGTAGGGGTCTCAGCCCCAGTGTGTCAGCTGCTTGCCGGCATTTTTCGGAGCCGCACCCCTTCCCAGATCCCCCTGCCCCGTGTCACGGACTGTCCCTCAGgctttctgctttattttgcttattgGTTTGAATGCCAAACCTGTTCTCTATCCCTGCCTGACTGGTGTGTCCTCAGGGCCTGCTGGTTTCTTTGGGCGAGTCCCCAGTTTGGCACATCGCTGTCCTGATCCAGCAGAGAAGTGAGGCCTGAATCCACTCTGTCATCGAGGGGAAGTTGCTCCTGAAGCCGGCAGCTTCTCTGTCATGCTCGGCTCGCGTGGAAGAGTTGGGATCTGCACAGGATGACCCATTGGATATGACCGGAGGAGCCTGCGGCAAGATCATCCTCTCTCCTCGTGCACGCAGTGCCGTGCGTAGGTCTGGCCGTTGATGATTGGATCAAATGGAACCAGGTTTGTCCGCGTTCTCTGGACTGCAGTTCTGTCCACATTCAAACGCTCTCCCTCAGACCAGAGCCGAGACCTCCTGGCCGACCATCGTGCACAGACGAGAGCCCGGCGTCCGGGAACCCAGACCAACTGCGTTCAGAGGTTTCTTCTGTTGTTGATAATCCTTTCTCtgtttgttcaatttaaatttaaatgtaatcaatgcACAATTATCTCACATAAGCCAATGTCAGTAATCAAAAAAAGTGGGTATTTTACATTGAAGTCTATTTAGAATGCAACTTTCTCTGTTCcgtatttttcatgttttcccGTGTGGAGGAAAACCAGGTTTCCAAATTGTGTTTGTGcaagaaaaactgcaaaaaacaacaaaaaaaacagcattgatCACCTGCTTGCTTGTGCTGGCGTTCCTCTTTGACGCGTGTTGTGAATCCAACTCGCGCCGCGGCCGCGGGGAGAGCCGCTGTGTGGGGGAGGCGGTGCCGCCCTGCTTTGGCGTGATTTTGGCTTCTATAGCCCTTCTCTGTGAGTGTATTTAAGACGAATACAAAAAagagcaaacagaaaaaaaaaaaaaaagaacattgttGTATGCATTCTTGTTTTGTGCCTGATGTAACCTGTACCACCAAGCAGATAACATTAACGCGTTCAGTAGAACTCAGTGTAACAAATCgcaattaatctttttttttttttataaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157440 lncRNA upstream 706960 596787 ~ 597135 (+) True G125613
TU157439 lncRNA upstream 728603 575290 ~ 575492 (+) True G125612
TU157432 lncRNA upstream 772183 529899 ~ 531912 (+) True G125605
TU157423 lncRNA upstream 816892 456502 ~ 487203 (+) True G125597
TU157380 lncRNA upstream 900504 339640 ~ 403591 (+) False G125561
TU157567 lncRNA downstream 16168 1323503 ~ 1328639 (+) True G125713
TU157592 lncRNA downstream 119298 1426633 ~ 1426943 (+) True G125736
TU157646 lncRNA downstream 287488 1594823 ~ 1609210 (+) True G125767
TU157621 lncRNA downstream 310473 1617808 ~ 1621888 (+) True G125756
TU157676 lncRNA downstream 504348 1811683 ~ 1814157 (+) True AMCG00000734
AMCG00000704 mRNA upstream 31130 1256781 ~ 1272965 (+) True AMCG00000704
AMCG00000708 mRNA upstream 54670 1248741 ~ 1249425 (+) True AMCG00000708
AMCG00000705 mRNA upstream 70161 1226317 ~ 1233934 (+) True AMCG00000705
AMCG00000702 mRNA upstream 170910 1111881 ~ 1133185 (+) True AMCG00000702
AMCG00000695 mRNA upstream 889300 414444 ~ 414795 (+) True AMCG00000695
AMCG00000715 mRNA downstream 88061 1395396 ~ 1395970 (+) True AMCG00000715
AMCG00000712 mRNA downstream 106460 1413795 ~ 1422116 (+) True AMCG00000712
AMCG00000713 mRNA downstream 125657 1432992 ~ 1447408 (+) True AMCG00000713
AMCG00000714 mRNA downstream 145277 1452612 ~ 1463637 (+) True AMCG00000714
AMCG00000717 mRNA downstream 247343 1554678 ~ 1575439 (+) True AMCG00000717
TU157377 other upstream 962324 339640 ~ 341771 (+) False G125561
TU157655 other downstream 292361 1599696 ~ 1600639 (+) False AMCG00000723
TU157662 other downstream 361510 1668845 ~ 1696247 (+) True AMCG00000729
TU159397 other downstream 7309864 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 8840522 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 10692329 11999664 ~ 12011425 (+) True AMCG00001002

Expression Profile