RNA id: TU157530


Basic Information

Item Value
RNA id TU157530
length 2360
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G125685
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1269231 ~ 1307353 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GctgatttttcttccttttaatttataaaaaaaaaaaaagattaattgcGATTTGTTACACTGAGTTCTACTGAACGCGTTAATGTTATCTGCTTGGTGGTACAGGTTACATCAGGCACAAAACAAGAATGCATACaacaatgttctttttttttttttttctgtttgctctTTTTTGTATTCGTCTTAAATACACTCACAGAGAAGGGCTATAGAAGCCAAAATCACGCCAAAGCAGGGCGGCACCGCCTCCCCCACACAGCGGCTCTCCCCGCGGCCGCGGCGCGAGTTGGATTCACAACACGCGTCAAAGAGGAACGCCAGCACAAGCAAGCAGGTGatcaatgctgttttttttgttgttttttgcagtttttcttgCACAAACACAATTTGGAAACCTGGTTTTCCTCCACACgggaaaacatgaaaaatacgGAACAGAGAAAGTTGCATTCTAAATAGACTTCAATGTAAAATACCCACTTTTTTTGATTACTGACATTGGCTTATGTGAGATAATTGTgcattgattacatttaaatttaaattgaacaaacaGAGAAAGGATTATCAACAACAGAAGAAACCTCTGAACGCAGTTGGTCTGGGTTCCCGGACGCCGGGCTCTCGTCTGTGCACGATGGTCGGCCAGGAGGTCTCGGCTCTGGTCTGAGGGAGAGCGTTTGAATGTGGACAGAACTGCAGTCCAGAGAACGCGGACAAACCTGGTTCCATTTGATCCAATCATCAACGGCCAGACCTACGCACGGCACTGCGTGCACGAGGAGAGAGGATGATCTTGCCGCAGGCTCCTCCGGTCATATCCAATGGGTCATCCTGTGCAGATCCCAACTCTTCCACGCGAGCCGAGCATGACAGAGAAGCTGCCGGCTTCAGGAGCAACTTCCCCTCGATGACAGAGTGGATTCAGGCCTCACTTCTCTGCTGGATCAGGACAGCGATGTGCCAAACTGGGGACTCGCCCAAAGAAACCAGCAGGCCCTGAGGACACACCAGTCAGGCAGGGATAGAGAACAGGTTTGGCATTCAAACcaataagcaaaataaagcagaaagcCTGAGGGACAGTCCGTGACACGGGGCAGGGGGATCTGGGAAGGGGTGCGGCTCCGAAAAATGCCGGCAAGCAGCTGACACACTGGGGCTGAGACCCCTACCACCGTGTTTAGGGATCCCAGGACATTCTTGAAATTATAATCGATAAGAATAACGATAACAAatcccccctccacctcccctgtccaaaaaatacagaattcagGACTCAGGTTTGTCTATTGTTGTGTAACGTGCGTCTCTGTGTTGCTCAGAGCCGCTCGCCGGCCAGAGAGAAGGGACTGGGAGACGGGAATCGGCTGATGAGGACTGAGCACGGAAACAAATCCTGCACTACAAACGGGGGCTGGGAAAGTGAACGGAAATGTGCTCGACTCTACCACCGCCGCAGATCACGGTCTGGGATGGGGTCCGTCCGGACGGGGCTCCTGTTCGGAAAGAGCCCCGTGTTTTGGCATTCACTCCGTCCGGAGAGATGAAGAGGGCGAGTATTCAAAATTTGGCTTTAGGCTCGAGAGGCTCTCAGTGGAGGACAGCCCCGACACACACGGTCCGACAGCACGACACACGGCAGCCTGCCTGCTCCTCACTGGTGTACAGGTGTGGGGTGAGCGAGTGAGCTTCGAATgtaagactgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtctgtctgtgtgcgtgtctgtgtgcgtgtctgtgtgcgtgtgtctgtgtgcgtgtgtgtgtctgtgtgcgtgtgcgtgtgtgtgtgcgtgtgtctgtgtctgtctgtgtgtgtgtgtgtgtgtgcgtgtgtgtgcgtgtgtgtgcgtgtgtctgtgtgcgtgtgtgtgtgtgtgtgtgcgtgtgtctgtgtctgtctgtgtgtgtgtgtctgtctgtgtgtgtgtgtctgtctgtatgtgtgcgtgtgtggtgtGTACACAAAGCAAATCACACCTCtcccccaaacaaaaacaaaaacgaacaGCAAGAGAGCCCAGTCCAGCCCCTCACAAACTCCCACGGCTTCACTTGACTCCAGTACCCCCTCCGACACCCCCGTCCTGGCGGCTGCGTCACACAGTACCCACAGTACTCTCAGCAGGCTGTGGCCCCCAGCCTGGGGCCCGGCAGCACCAGGACTGAGAGCGAACAGACCatgttatcatcatcatcatcatcaatggAAACTCACTCTACTCACTCTCGCCACTACAAGAAAGTTTAAAACATCGTACAGAACCACACCAGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157474 lncRNA downstream 417488 887154 ~ 887476 (-) True G125642
TU157452 lncRNA downstream 706629 597984 ~ 598335 (-) True G125625
TU157449 lncRNA downstream 777463 523521 ~ 527501 (-) True G125622
TU157417 lncRNA downstream 894147 409615 ~ 410817 (-) True G125591
TU157403 lncRNA downstream 928194 375820 ~ 376770 (-) True G125578
TU157564 lncRNA upstream 3486 1310839 ~ 1312254 (-) False AMCG00000710
TU157565 lncRNA upstream 12181 1319534 ~ 1319813 (-) True G125712
TU157574 lncRNA upstream 16150 1323503 ~ 1328648 (-) True G125719
TU157743 lncRNA upstream 268008 1575361 ~ 1577346 (-) True G125845
TU157778 lncRNA upstream 514899 1822252 ~ 1827742 (-) True G125875
AMCG00000707 mRNA downstream 28960 1270353 ~ 1276004 (-) True AMCG00000707
AMCG00000706 mRNA downstream 99067 1154310 ~ 1205897 (-) True AMCG00000706
AMCG00000703 mRNA downstream 156365 1135468 ~ 1148599 (-) True AMCG00000703
AMCG00000701 mRNA downstream 445153 842271 ~ 859811 (-) True AMCG00000701
AMCG00000699 mRNA downstream 624481 679014 ~ 680483 (-) True AMCG00000699
AMCG00000710 mRNA upstream 468 1307821 ~ 1312408 (-) True AMCG00000710
AMCG00000711 mRNA upstream 10695 1318048 ~ 1328817 (-) True AMCG00000711
AMCG00000709 mRNA upstream 30595 1337948 ~ 1344902 (-) True AMCG00000709
AMCG00000716 mRNA upstream 141489 1448842 ~ 1450137 (-) True AMCG00000716
AMCG00000718 mRNA upstream 161344 1468697 ~ 1470445 (-) True AMCG00000718
TU157359 other downstream 1091352 194644 ~ 213612 (-) False AMCG00000687
TU157704 other upstream 79490 1386843 ~ 1422410 (-) True G125814
TU157731 other upstream 186629 1493982 ~ 1500661 (-) False AMCG00000719
TU157772 other upstream 454909 1762262 ~ 1767476 (-) False AMCG00000731
TU157782 other upstream 522194 1829547 ~ 1831310 (-) True AMCG00000741
TU157989 other upstream 1144515 2451868 ~ 2457883 (-) False G126017

Expression Profile