RNA id: TU157565


Basic Information

Item Value
RNA id TU157565
length 280
lncRNA type intronic
GC content 0.40
exon number 1
gene id G125712
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1319534 ~ 1319813 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaacgagctgagattaggagctctCCCTTTAAGACagtctcagctcgttacctgtataaaagacacctgggagccagaaatcttgctgattgataggggatcaaatacttatttccctcattaacatgtaaatcaatgtataacttttttgaaatgcgtttttctggatttttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157564 lncRNA downstream 7280 1310839 ~ 1312254 (-) False AMCG00000710
TU157532 lncRNA downstream 12181 1269231 ~ 1307353 (-) False G125685
TU157574 lncRNA upstream 3690 1323503 ~ 1328648 (-) True G125719
TU157743 lncRNA upstream 255548 1575361 ~ 1577346 (-) True G125845
TU157778 lncRNA upstream 502439 1822252 ~ 1827742 (-) True G125875
TU157974 lncRNA upstream 1108128 2427941 ~ 2520220 (-) True G126005
TU157998 lncRNA upstream 1140902 2460715 ~ 2462488 (-) True G126020
AMCG00000710 mRNA downstream 7126 1307821 ~ 1312408 (-) True AMCG00000710
AMCG00000707 mRNA downstream 43530 1270353 ~ 1276004 (-) True AMCG00000707
AMCG00000706 mRNA downstream 113637 1154310 ~ 1205897 (-) True AMCG00000706
AMCG00000703 mRNA downstream 170935 1135468 ~ 1148599 (-) True AMCG00000703
AMCG00000701 mRNA downstream 459723 842271 ~ 859811 (-) True AMCG00000701
AMCG00000709 mRNA upstream 18135 1337948 ~ 1344902 (-) True AMCG00000709
AMCG00000716 mRNA upstream 129029 1448842 ~ 1450137 (-) True AMCG00000716
AMCG00000718 mRNA upstream 148884 1468697 ~ 1470445 (-) True AMCG00000718
AMCG00000719 mRNA upstream 158927 1478740 ~ 1500656 (-) True AMCG00000719
AMCG00000720 mRNA upstream 187488 1507301 ~ 1510191 (-) True AMCG00000720
TU157359 other downstream 1105922 194644 ~ 213612 (-) False AMCG00000687
TU157704 other upstream 67030 1386843 ~ 1422410 (-) True G125814
TU157731 other upstream 174169 1493982 ~ 1500661 (-) False AMCG00000719
TU157772 other upstream 442449 1762262 ~ 1767476 (-) False AMCG00000731
TU157782 other upstream 509734 1829547 ~ 1831310 (-) True AMCG00000741
TU157989 other upstream 1132055 2451868 ~ 2457883 (-) False G126017

Expression Profile