RNA id: TU157877


Basic Information

Item Value
RNA id TU157877
length 280
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G125955
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 2291835 ~ 2293872 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACAGTTGGTGCATCAGGTGTGATCTCTGTTACTACACGATCCAAAGAGGAAACAAGCAGCTGTTCAATGCTTGGCAGGTCAGAGAACTCAGACACAGACTGAGCAGAACTGGGTTCAGATGAGATCTTTTGCAATTCTCTGCTATCAGAGTTCCTAGTTCCAATTGCATAGATCAAGACTCCATGTTTTTTCAGATCAGAGGCTGGTGTATCAACACTATCACTTGACCTTCCACCAGTCAACACAACCAAGAGCTGGGGAACACCTTCAGTACGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157676 lncRNA upstream 477678 1811683 ~ 1814157 (+) True AMCG00000734
TU157621 lncRNA upstream 669947 1617808 ~ 1621888 (+) True G125756
TU157646 lncRNA upstream 682625 1594823 ~ 1609210 (+) True G125767
TU157592 lncRNA upstream 864892 1426633 ~ 1426943 (+) True G125736
TU157567 lncRNA upstream 963196 1323503 ~ 1328639 (+) True G125713
TU157948 lncRNA downstream 133798 2427670 ~ 2520585 (+) True G125986
TU158014 lncRNA downstream 264120 2557992 ~ 2558257 (+) True G126036
TU158024 lncRNA downstream 472383 2766255 ~ 2766539 (+) True G126044
TU158031 lncRNA downstream 577044 2870916 ~ 2885184 (+) True G126050
TU158038 lncRNA downstream 716371 3010243 ~ 3068463 (+) True G126054
AMCG00000758 mRNA upstream 65474 2213649 ~ 2226361 (+) True AMCG00000758
AMCG00000753 mRNA upstream 133109 2157641 ~ 2158726 (+) True AMCG00000753
AMCG00000752 mRNA upstream 237301 2053187 ~ 2054534 (+) True AMCG00000752
AMCG00000746 mRNA upstream 253845 2034842 ~ 2037990 (+) True AMCG00000746
AMCG00000747 mRNA upstream 267489 2008762 ~ 2024346 (+) True AMCG00000747
AMCG00000762 mRNA downstream 51449 2345321 ~ 2382010 (+) True AMCG00000762
AMCG00000761 mRNA downstream 95803 2389675 ~ 2390463 (+) True AMCG00000761
AMCG00000760 mRNA downstream 129173 2423045 ~ 2462484 (+) True AMCG00000760
AMCG00000764 mRNA downstream 173490 2467362 ~ 2519028 (+) True AMCG00000764
AMCG00000766 mRNA downstream 666617 2960489 ~ 2977911 (+) True AMCG00000766
TU157662 other upstream 595588 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 691196 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 1950064 339640 ~ 341771 (+) False G125561
TU159397 other downstream 6323327 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 7853985 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 9705792 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 12876039 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 13115240 15409112 ~ 15420880 (+) False G128823

Expression Profile