RNA id: TU157948


Basic Information

Item Value
RNA id TU157948
length 1398
lncRNA type read_through
GC content 0.53
exon number 2
gene id G125986
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 2427670 ~ 2520585 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCCGCCAAAGCGAGATCACACCCTGTATCTGATGAAAGAGTGATGTAATCCCCTAATCCTGCATAAATCCCTCCTGTTTGAAGGAATAGAGTGTGCGTCTTCCTAAGGGGCTGCTGTGGGATTTAACTCATGGAAAAAGACTGGCTGTCGTCTTAGCCCAGTGTCCCTGTCCAAGGGCCACGGGGGCGGACAGTGTGAAGCCACTGGGCAGAGCCGTGTAGCTGCAGCGGGCTGGTGGGGATGTGGGGAGCGGCAACGTGGCTCAGAGGGAACAGCGCTCGAGCGGGCGGCAGGGTGAACGGATCTGTGCCGACGAGACGCTCTGATTAAACCATCCCTGTGCGAAGTCAGTCCCCCCCGAGGGCCGAGTTCAGCAGCAGGACAGGACGCAGAGGGAAGCAAGATACGGGCGGGAAAGTCTAgacttttaaatgcataaaaaaaaatagggaaTCGGACATTTtttttaggatttattttagTCTAAGGTCTTCAGCCAAAAAAAAGACCAATACAGTGTGTACctttataaacatacacacgctatatatatatcacacacacacggtgTGCAGGAGGTCGAGTAATCCAGTCAAAAATAAACTTCACTCAATTAACGTCAGTCGAAACAAAGTACTTTACTGTAGAAATCCTTCAAGAATGTGGTTTAAATAAACGTATTCATCGCTAACACAATAATGCCAAAAAACTAAGAGATTCTCCTCTAAAATGTCAGTTCTACTTCCTAAGGTTTGACACTCATTCCTGTATCCTTTACCTCGGCTCTGAGGCAGCGGGTCGTGTCTGCGCTGTTCTTCGCCGATATAAACGGCCCCGAGGTTCGCGGTGGACGTgctgatgggggggggggggacagttCGGGACGGCGATTCAAGTTTCCAGGAGCTGAAATGCAAGCTGTGTAAACCATGCCGATGAAAGCCAGGGTGGAAACACAATGAAATGGACAAAACGAAAGCGCTCGCTCTGCAAAGCTGCGTGGGAATGGGAAGCCACTTAtctccaacccccccccccccccccccccgccggcCGCGAGTTGCTCATGCACGCCCCCCCCGCACCGCGACAAGCGTTAAGGCGAAGCGAAGTACCAACAGGCGGATCCTCTTCTCCACTCTGGCTCTACACACAcggatgtatatatatatataaatatatatctttgcgtccccccacccccgcagCCCGGCGGTGAGGCGTGccgaggggcggggggggcggctCCGGCTAGAACTGGATGTCCAGGACGATGCGGTCCTCGAAGATGGCGATGAGCAGCATGGTGCCGAAGCCCACCAGCATGCCTAGGTTCTGCAGTAGGAAGTGGCCCAGCCGGCAGCGCTTGTGCTCTTCGCTGTCGCCGTGAAGCATC

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157877 lncRNA upstream 133798 2291835 ~ 2293872 (+) True G125955
TU157676 lncRNA upstream 613513 1811683 ~ 1814157 (+) True AMCG00000734
TU157621 lncRNA upstream 805782 1617808 ~ 1621888 (+) True G125756
TU157646 lncRNA upstream 818460 1594823 ~ 1609210 (+) True G125767
TU157592 lncRNA upstream 1000727 1426633 ~ 1426943 (+) True G125736
TU158014 lncRNA downstream 37407 2557992 ~ 2558257 (+) True G126036
TU158024 lncRNA downstream 245670 2766255 ~ 2766539 (+) True G126044
TU158031 lncRNA downstream 350331 2870916 ~ 2885184 (+) True G126050
TU158038 lncRNA downstream 489658 3010243 ~ 3068463 (+) True G126054
TU158053 lncRNA downstream 561161 3081746 ~ 3083587 (+) True G126068
AMCG00000761 mRNA upstream 37207 2389675 ~ 2390463 (+) True AMCG00000761
AMCG00000762 mRNA upstream 45660 2345321 ~ 2382010 (+) True AMCG00000762
AMCG00000758 mRNA upstream 201309 2213649 ~ 2226361 (+) True AMCG00000758
AMCG00000753 mRNA upstream 268944 2157641 ~ 2158726 (+) True AMCG00000753
AMCG00000752 mRNA upstream 373136 2053187 ~ 2054534 (+) True AMCG00000752
AMCG00000766 mRNA downstream 439904 2960489 ~ 2977911 (+) True AMCG00000766
AMCG00000769 mRNA downstream 475928 2996513 ~ 3011360 (+) True AMCG00000769
AMCG00000768 mRNA downstream 503933 3024518 ~ 3037733 (+) True AMCG00000768
AMCG00000767 mRNA downstream 535837 3056422 ~ 3061712 (+) True AMCG00000767
AMCG00000774 mRNA downstream 601763 3122348 ~ 3133195 (+) True AMCG00000774
TU157662 other upstream 731423 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 827031 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 2085899 339640 ~ 341771 (+) False G125561
TU159397 other downstream 6096614 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 7627272 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 9479079 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 12649326 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 12888527 15409112 ~ 15420880 (+) False G128823

Expression Profile