RNA id: TU157991


Basic Information

Item Value
RNA id TU157991
length 5911
RNA type TUCP
GC content 0.42
exon number 2
gene id G126017
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 2451868 ~ 2457883 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attaacttaattgtatacaaaataaacagtacacGTCTTTGAATAAATCTTTGGTTTATGAATGGCACCACTTTTATTCATCAAACAATTTCACCACAACTATTCATTGTTACAAGAGTGCTAATGTCAAACACTGTTCTCATCAACCTTTGCAATGAAGCAGCAATTTGCTTTTAAACACCTCTCTTCGTATTAACTGTTGTGACACTAATAAAGTTTCACAGCCACTGTTATTTCAACACCACAGAACGTGTAAAAGCTTTAAGGccaaattaaacaaagtttttaaatgtgtgtgtttttggtaaTGAATAACATCAGGATATTGAAACATTACTACATGTTTACTGTGTGTTGTGCATTGGATATAGATATCAAAACTAACACACTATGCTCCCAGTAATACAATACTTAATGAACTAATTTTTATAGATGTTTATTAGACTTTAAGTACAGGTGCAATTGTGCGATTGACAACTTAAATCAAGGCACTGATATATCTAATATCTGCCTAGTAGATCACAAATATCAAACAGGAGGTAATATGATCTTAGTTGTAGTTTACTACATGGATCACAAAAGGCAATTATATAACTTTATAGCTATCTGCTGTATCTatgaattacaccaattttacATCAAAGCTTTTTCACAAACGTGATCTTTGGAAACCCTTATAAAAAACAGTCacacattttgattttcatCAAAGTATATGATTAGAAtgaattcaaatatttgtttctgctAGAATGAATGTGGATTTCCAACAAGTAGGGGCTCAGATTTATGGAAACATTTATGATGCTTTATGCCCAGCAAAAAACACcatcattttcaaaaacattaattatatcaCAAATGTGAACCTTACTTGGttagaaagaaacaacaacacttgCAATCAATGCAAAAAAGTGTTAATCCAGAAATgcacttatttttattgtgttctCCTAATTAAAGTGCGATTAGAACCTATTTAAAGGTATAGTATGCATAAAGAAATATACATCTCTTTCTTTCAATTTAAGTTCAACTAAAGTCGAATTCTATACAGTAGACTAAGCACAAGTTTATGAATCTATACTTATAGATATTCATTGTGATATACAGTCTCTTTACAGATAAGCTACATCACCTAACTGGATGTTGaatacagattgttttgtttgcttgcttgcttgcatCTATTTTGCATCCATTGACCTTaagtttatttctgtttttgcttcCAGGTCAAATGGTTATGAGAAAAGTGAAAAtgcttatatatttacatgtctGTCCCCAAATATAGCTGCACAGGTCATATTTGTGAAAGATGTATAAATATGCAGTGTCTAGGGAGATCTTTCAACTGTGACACTCTTGATTTCAAAGCATTTATATCTTTCTAAATCCTCACAACTTACAACCCGGGACATACGATTTGCAAAAAGGAAAGCAGATATAGTAACACACCTGGAAATGTAAGTgtgcatttcagtatttcattatatatacatgtttccTCTGGAAAACCATTTGACCTTTTGAATTGTTAATTTAGAGCACTGTATTATCATCTTTCAATGCTCAGAGTAGTTTGAGCTGACATACTGGtgattcaataataataataataataataataataataataataataataccacaaACATTCTGGTTTAATTaactcttatttttttaaagacttccggagtttatgtttttttttttttcatgtggtaCTTTTGGGACATTTACTAAAATTATATCCTTGGAAttcagaaaaagtaaaataataataataataataataataataataataataataataataataaatcattagtGACCTGTTTTGTTGAAGCACACACAGCTCTCACTGCAAACAGGTTTGCGATCAATACCAGGGCATTTAAAAACCCTTTGCACATCATgttcagaaacatgttttgtatgCGTTTCACAACATTTACTAAACCAAAAATGAGAGAGCAAGCCCAAGGTTTTGAGGGACAGTAACAAAAGCCAGTGCctacaatattacaatacacTTAATGACATAATGATATGATATAATATACTAGGTTAGACccctttctttccatttccatgATAAGTGTGCATAGAACTACATGACATGGAACTCCAAACTCAGCAGATGTCTTACTCAGGTCTAGGAGGACATAAACATTTTCTGAAGGACTTGGCCCATTGGAGCTGAACATGGATGTGATAAGATCGCCTCTGTGGCTCTTAACcatgcatttcttttaattgaTCTTATTGGATCATAATGGATCCTTAAGACACCCTACACTCCTCCTTCCCTTTCCCCTTTGCTTTCTTACTCCCTTTACCTGAGTCTGCCTTGCCAAGGTCTTCACTGCCCTCAGGTGTGCTTTCCTTGCTCTCTTCTCTAACCCCTGGGCTCTCACTGCCTTCACCCTGACTCTCTGATTCCTCCACCTCTCTGCTTGCCTCTTTTCCTTCCTCAACTCGGCTGTCCCCCTGGTTAGACTCGCTCTGTTCCTGCTCACTCCCCTCTAAGCCTTTCACATGTTCTGCTTGTTCCACAGGAGAACTCTCCTCCTCCCCATTTTTCTGCTCAGGTTCTTGTTTTTGAGTTTCTGATGGTTCTTGGGCATCTGTTGTGTTAGACTCTGCATGTTCTGATGTTTTATCTTGACTAACGCTGTTGGCCTCCAGATTTGCTTCCCCCTCTTTCACACTCTGCTCAGCTGTGGTGGCTGTGGCAGCTGTTTGTCCTTCCTTGGTCTGATTTTCTGGAAGGACTTCCATTGACGCCTCAAAATCCTGCCCTGATTCATCGTCAAACTCAAACGAGtctccatcctcctcttcttcttcatcctcctcctctttgtctgctgtttctttttcattcttggGCTGAATCGGAGGTTCATCCTTCTCTTCTCTGGAATGTTCTTGCTCTTTTTCAGACGCATCATCCACTGTCTTGACATCAGTCTGTGCGGCAACCTGCATTTCAGTGGAGTCTCCTGCTTTATCCTTCTCTTGACTCTTGACTGTGACAGTTCCTTCCTGGACTTCTGTCTGGGCTTGGTGTTCGGGACTCTGGCCTTCACTCCCTTTATCATTGTTTGAATCTGGTGCAGCAGGTTCATCCACGACTGTGACAGGTCCTTCCTGGATTTCTGTCTGGGCTTGGTGTTCAGGATTCAGGTCTTCACTCCCTTTATCTTTGTTTGAATCTGGTGCAGCAGGTTCTTCCACGACTGTGACAGTTCCTTCCTGGACTTCTGTCTGGGCTTGGTGTTCGGGACTCTGGCCTTCACTCCCTTTATCTTTGTTTGAATCTGGTGCAGCAGGTTCATCCAAGACTGTGACAGGTTCTTGGTCACTTGTTCCATCTGAGGGGACATCCTGGGAGCCATCGCTAACCATTTGCTGAACACCAGCTACTTCTGACAACATAATTTCTTCTGAAACCTCACTGATCTGCACCTCTTTCTCCTCGAACGATGATTTACCATCTTTGACATCCTCTTTTGGCATGTCCTCTAACTGTTCTTTAATCAGTGCCTCAGTTTTTTCCCCGGTGTCCCTCTGATGCTCCTCTGTTTCCTCAGCTGGCCACTGCTCTTCCATGGTGATTACTGATTCATCAGCTGCTAATCCATCACCTTCGACTTGTGCTTCAGTCTTTGCCCCAACTTCACTTTCTTCCACCTCTGTTCTTTCTGCAAGTTGCATGTCAGCGTTTTCAGAAGTCTCCTCAGGCATTCCTTTCGATGCGTGTTCTGGAACACCCAAAGGTTTCTGGTCACTTTCTTCCTTCTCTGCCTCAACACTACTTTTTGTAACACCTGTTTCCATGAGGACCTCTTCTGGGACATCACTGGTATATGCTCCTTCTTCTGGAGCTGTGTCTAATTTGTcggggtgtgtgtttgtatctggATTATCCTGGGGGTCAAGTTCAGGTTCATTTTTTAACACAGCATTTTCCAATTGAGGCTCTGAAGCATCTTCACACACCTGGGTCTCTTCCTGTGGGCTGGTGTCTGATGCATTCTTTTCATCTTCACCTTTGAGCACAGCCTTAATTACTATGGATTGAAGGCAGTCTTCAAAGATGTCCCTCTCATCTGTTTTTAACTCACTCCTTTCAACAGGTTCCTTTTTCTCCCTCTGGTCACCTGTAGGATTTTCCTCTTCAGGTACAGCTGTGGACATCTGGGCTTTCTCATCCTCCTGCTGATCTCTGGGCTCCTTTACCTCACACTCAGTCTCTGATTGGCCTTCATGTTCTTCTTCATGTTTGTGCACTGTGTCAGGTatcttctccttctccactCCCACGGCCGTTAAGGAACCGTCAACCTTCTTGTCTTCTTCCATTTCCTCTGCATCTGCCTCCTGGATGATGTTGTCCTCCTCATTGCTTTTAGCTTCCTCTGGTTTCCCTTCAGTTTCAGCCTCAAGATCCTGGTCTCCCTCCTTTGCCTTCACCTCACTCTCACCTTCACTCACCTTGGCTGTTCTCTCTACAGTCTCCCTGCCTGGATCATCAGGGCACTGAGCCTCTGATGACCCATGAGGCCTCTCTGATGAGACATCTTCACTTTCATCTCTGCTCTCGGGGTCATTCTGAATGAGCAACAGAGCTGGGGTCACTATAACGACCGACAGAGCACTTTCTCCTTCTACCTCTGCCTCCGTGGAAACAAGCTTGGGTTCTTGAACCCTCCCTTCCTGATCACTTAAAACCTCAGCTACCTTCTCCTCACTGCCACTGGCTTCACGATCACAACAACCATCCTCTGGTTGGCCCACTGCGAGGTCCTGAGACTCTTGTTCGCTACCTTCTCTCCTGGCAGACAGCACGGTGCTGTCTCTGACTGGTTCGACGTTTTCCTCCACTGATTTCATGGAATCTGTATCCTGGCTATCAGTTTCCTCCTCGCCCTCAGAATCACTTTCCTGGCCGTCCTCTTTTACAGCATCGATAATTAGTTTTGCACTCTCGCTGACACTGACTGTTTCTTCTACCTGACCTGAACCGTCACCTGTTGAGTCTTTGCTCTCGACACTTTCCACCCCAGAAACCAAACCTTCATTTTCTAGATCCTGTGTTTCATTCTCCGTGCAATTCTCTCCAAAGCTCAACTCTGGGCTCTCCCCTACAATCTCACTTGGAGCTTGTATCTTGGTTTCAATGTCTGCAGCCCTTTTGCCCTCTGCCTTTTCCTCAGTGCCTGTGCTTGTCTCATCTGCTTCTGCTGAACTAGACCCGTCACCGCCTGAATCTAAGCTTAGAGCTTTACTTTCCTCCCCTTTTGCATCTACGCTGTCTCCAGTCTGACCACCGGTCTCACTGCTGACCACCCGCTCTTCTGAGCTTTCATCGCCCTCACTGGAGGACCTCTGCTCTCCAGTTCCCTCTTCTTCAGGCGCTGTTATTGTCACCTGCACCTCTGCATTACCCATTTCAGTAACAGCGTCTCTCTTACCCTCTCTCTCCGCTACTAAGTTAGCGTCCCCTGTACTGTCACAGACTAAGCTAACCCCTAGTGGCTCTGGCATGACCTTGGTAATGTCATTGTCTGTGTCATGTTGATCTGTTACCGAGTCCCGGGTGTCTTCATCACTGCCCAAGGGCAAGTGAGACTGTGTTTTCTCTGCGTTCTCTGGGGTGGGTATACTGGCAGTGTGGCTCTGTTCTTCTAGGTTATTAAGAAGGTCGCCACAGGGAGCTGGCGATGACAGTTTGTCCGCACCCTGGATCCCTTGCATCTTTTCGCCACCACTCCCCTCCTCTGATTCTGCCTCCTCCTGCTGCCCCTCAGTATTGTTCTCAGCCTTCTCCAAGATCTCTTTATTTCCAACATCCTCcacatgtttattttccttctgcaCCTCCTTGACTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157778 lncRNA downstream 624126 1822252 ~ 1827742 (-) True G125875
TU157743 lncRNA downstream 874522 1575361 ~ 1577346 (-) True G125845
TU157574 lncRNA downstream 1123220 1323503 ~ 1328648 (-) True G125719
TU157565 lncRNA downstream 1132055 1319534 ~ 1319813 (-) True G125712
TU157564 lncRNA downstream 1139614 1310839 ~ 1312254 (-) False AMCG00000710
TU157998 lncRNA upstream 2832 2460715 ~ 2462488 (-) True G126020
TU158015 lncRNA upstream 100108 2557991 ~ 2558249 (-) True G126037
TU158101 lncRNA upstream 675993 3133876 ~ 3135913 (-) False AMCG00000777
TU158325 lncRNA upstream 1092957 3550840 ~ 3552977 (-) True G126275
TU158314 lncRNA upstream 1095164 3553047 ~ 3656561 (-) True AMCG00000804
AMCG00000763 mRNA downstream 52513 2394089 ~ 2399355 (-) True AMCG00000763
AMCG00000759 mRNA downstream 125263 2262668 ~ 2326605 (-) True AMCG00000759
AMCG00000755 mRNA downstream 307231 2133482 ~ 2144637 (-) True AMCG00000755
AMCG00000756 mRNA downstream 331109 2098930 ~ 2120759 (-) True AMCG00000756
AMCG00000757 mRNA downstream 359900 2091703 ~ 2091968 (-) True AMCG00000757
AMCG00000765 mRNA upstream 62352 2520235 ~ 2537868 (-) True AMCG00000765
AMCG00000771 mRNA upstream 586284 3044167 ~ 3050016 (-) False AMCG00000771
AMCG00000770 mRNA upstream 594998 3052881 ~ 3055879 (-) True AMCG00000770
AMCG00000775 mRNA upstream 607927 3065810 ~ 3078543 (-) True AMCG00000775
AMCG00000776 mRNA upstream 625572 3083455 ~ 3103231 (-) True AMCG00000776
TU157782 other downstream 620558 1829547 ~ 1831310 (-) True AMCG00000741
TU157772 other downstream 684392 1762262 ~ 1767476 (-) False AMCG00000731
TU157731 other downstream 951207 1493982 ~ 1500661 (-) False AMCG00000719
TU157704 other downstream 1029458 1386843 ~ 1422410 (-) True G125814
TU157359 other downstream 2238256 194644 ~ 213612 (-) False AMCG00000687
TU158078 other upstream 579048 3036931 ~ 3041964 (-) True G126089
TU158081 other upstream 586374 3044257 ~ 3049951 (-) True AMCG00000771
TU158093 other upstream 673831 3131714 ~ 3133817 (-) False G126096
TU158094 other upstream 673831 3131714 ~ 3149252 (-) True G126096
TU158313 other upstream 1194774 3652657 ~ 3656561 (-) False AMCG00000804

Expression Profile