RNA id: TU158024


Basic Information

Item Value
RNA id TU158024
length 285
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G126044
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 2766255 ~ 2766539 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacataagaacataagaaagtgtccaatcgagaggaggccattcgccccatcgtgctcgtttggtgtccattaataactaagtgatcaaggatcctatccagtctgtttttgaatgttcccacattgtctcttcagccacatcgctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtctcgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158014 lncRNA upstream 207998 2557992 ~ 2558257 (+) True G126036
TU157948 lncRNA upstream 245670 2427670 ~ 2520585 (+) True G125986
TU157877 lncRNA upstream 472383 2291835 ~ 2293872 (+) True G125955
TU157676 lncRNA upstream 952098 1811683 ~ 1814157 (+) True AMCG00000734
TU157621 lncRNA upstream 1144367 1617808 ~ 1621888 (+) True G125756
TU158031 lncRNA downstream 104377 2870916 ~ 2885184 (+) True G126050
TU158038 lncRNA downstream 243704 3010243 ~ 3068463 (+) True G126054
TU158053 lncRNA downstream 315207 3081746 ~ 3083587 (+) True G126068
TU158251 lncRNA downstream 789027 3555566 ~ 3558424 (+) True G126215
TU158279 lncRNA downstream 886134 3652673 ~ 3656581 (+) True G126240
AMCG00000764 mRNA upstream 247227 2467362 ~ 2519028 (+) True AMCG00000764
AMCG00000760 mRNA upstream 303771 2423045 ~ 2462484 (+) True AMCG00000760
AMCG00000761 mRNA upstream 375792 2389675 ~ 2390463 (+) True AMCG00000761
AMCG00000762 mRNA upstream 384245 2345321 ~ 2382010 (+) True AMCG00000762
AMCG00000758 mRNA upstream 539894 2213649 ~ 2226361 (+) True AMCG00000758
AMCG00000766 mRNA downstream 193950 2960489 ~ 2977911 (+) True AMCG00000766
AMCG00000769 mRNA downstream 229974 2996513 ~ 3011360 (+) True AMCG00000769
AMCG00000768 mRNA downstream 257979 3024518 ~ 3037733 (+) True AMCG00000768
AMCG00000767 mRNA downstream 289883 3056422 ~ 3061712 (+) True AMCG00000767
AMCG00000774 mRNA downstream 355809 3122348 ~ 3133195 (+) True AMCG00000774
TU157662 other upstream 1070008 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 1165616 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 2424484 339640 ~ 341771 (+) False G125561
TU159397 other downstream 5850660 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 7381318 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 9233125 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 12403372 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 12642573 15409112 ~ 15420880 (+) False G128823

Expression Profile