RNA id: TU158031



Basic Information


Item Value
RNA id TU158031
length 373
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G126050
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 2870916 ~ 2885184 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCTGActtctagcatcaacaaggcattttcgcccacaggactgtcgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatgtatatata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU158024 lncRNA upstream 104377 2766255 ~ 2766539 (+) True G126044
TU158014 lncRNA upstream 312659 2557992 ~ 2558257 (+) True G126036
TU157948 lncRNA upstream 350331 2427670 ~ 2520585 (+) True G125986
TU157877 lncRNA upstream 577044 2291835 ~ 2293872 (+) True G125955
TU157676 lncRNA upstream 1056759 1811683 ~ 1814157 (+) True AMCG00000734
TU158038 lncRNA downstream 125059 3010243 ~ 3068463 (+) True G126054
TU158053 lncRNA downstream 196562 3081746 ~ 3083587 (+) True G126068
TU158251 lncRNA downstream 670382 3555566 ~ 3558424 (+) True G126215
TU158279 lncRNA downstream 767489 3652673 ~ 3656581 (+) True G126240
TU158294 lncRNA downstream 785618 3670802 ~ 3673176 (+) True G126248
AMCG00000764 mRNA upstream 351888 2467362 ~ 2519028 (+) True AMCG00000764
AMCG00000760 mRNA upstream 408432 2423045 ~ 2462484 (+) True AMCG00000760
AMCG00000761 mRNA upstream 480453 2389675 ~ 2390463 (+) True AMCG00000761
AMCG00000762 mRNA upstream 488906 2345321 ~ 2382010 (+) True AMCG00000762
AMCG00000758 mRNA upstream 644555 2213649 ~ 2226361 (+) True AMCG00000758
AMCG00000766 mRNA downstream 75305 2960489 ~ 2977911 (+) True AMCG00000766
AMCG00000769 mRNA downstream 111329 2996513 ~ 3011360 (+) True AMCG00000769
AMCG00000768 mRNA downstream 139334 3024518 ~ 3037733 (+) True AMCG00000768
AMCG00000767 mRNA downstream 171238 3056422 ~ 3061712 (+) True AMCG00000767
AMCG00000774 mRNA downstream 237164 3122348 ~ 3133195 (+) True AMCG00000774
TU157662 other upstream 1174669 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 1270277 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 2529145 339640 ~ 341771 (+) False G125561
TU159397 other downstream 5732015 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 7262673 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 9114480 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 12284727 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 12523928 15409112 ~ 15420880 (+) False G128823

Expression Profile