RNA id: TU158038


Basic Information

Item Value
RNA id TU158038
length 4634
lncRNA type read_through
GC content 0.49
exon number 2
gene id G126054
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3010243 ~ 3068463 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcgcacacacacacacacacacacacacacacacacacacacacacagtgtcctCCAGTGCCTCCTATGCCTGGGGAAGGTGGGAGACCTCAATCTCGGGACATCATTGCCAGCCCTGTATTGCAGCTCCAGGGATGCCCTCGTTCTGCTCGATGCGATTCTGAAACCCTAGGATTGAAACCCTGACTGGTCAAACACCGCGCCACCCTGCCTTCTGGCCCTCTTCCCTTCTCGCTCTAAACACATCCATAGTCTTTGCTCAGCTTCAGgacattcaaacaaaaacagacgTTTAAATGCACCTCTTCACTTTGTCGATACCTTTTCTTCACAGCGGTCCACTCGGACACTTACTGACCCAACTGACGCTCTTCAACCTCACCCTTTCCTTCTCAAGAACACATGCCttcctttcttctctctctctctcttactacGAGACCCATCCTTTGGCACTCCATGGCTTCCTCTGTACTGTACAGCATTTGCATCATCCAAGATCTCAATGAGGACAGCTCTGGGCTCTTGCGTAACGAGGCACTAGATGGCACAGGCGGCTCataggtttgtttttctgttacagCTCTTTTTACCTGCTCAGCTATTGCCTTCAACGCCAGCGAATCTAAACCCTCAACGTCAACGAACAATCGTCTCGCTGCCGAGGGACAGACGCCGTGTCTCGGGATCTGACCCGGGACGGGCAGGCCGTGCACAGAGACGCCACACATAGTCGGTGTCTGCTGTTTTGAAACCCTCGCAGCACGAGGGGAAGTTCAAGGGGAACACGGGCCGGAAAGGCTCACGATTGTGAAACCGTTCTACTTTGCAGTGCTCACTTACCACCCCGGGCGCTGGAGCGACCTCAGAGCGGAGATCCACGGTAAACACAGACACCGAGGGCACACCCTGATCCTTTCAGTGCGTTCTGATGCCAATGAAAGAGAATATATCGGGGCTGAAGAGGATACTATGAGTTTGATTTGCATTCTATGTTCCCCTTCTTGAATGATCCCACATTCCCAGGTTTACGCTATAGGACAGGTGCtggacaacacaacacacaacacaatctcTCTCGCACACAATAATGATTATGATCCAGGACTGTTagttttaatgttctttttccATGCAAAACCCCCCGCGCTGCTCCAACGCCAGGAGTCGGGTCTGTCCAGTCACCCTCCCCTACACCGGGCATGGTCCCCACACAGGAGAACCCAGATATTTTGTAATTCACCTCCTTGACTTTACAATTAGGTCAACCATGTCCTCCCAGAGACACTGCATCACGGGGTGGAGCAGAAAACCtgcatgtattgtttatataaaacagcCTGGTGTGCATGCGAACAacagtataaaaatgtataaaatatgtttttgctgCTGGCTAACAGTTCTTAATTAAGTGAACCTGAGATCTACAaaattttcttttaaagctttccaaaaaaaaaatatatatatataaaaatgacttAACACGACGGTATTAGAATGATTCAAAACGTCCATCAGAGAAGACAGTCCCTTGGTCCGGAGGAGCCTTAACTACCATTGTTCAGATTGGACTTCTGAGCACGCACAACACCCCCCCGCTTGGCCACAGGGATGGTTTCATCCACAGACCTACACAACTCATATGCAGATTGAAGACAAATGTCtcaacaggagagagagagagagagagagagagagagaaggaagttTCTCAATCACTGGAGGAGCAAGAACAGTAAATCGTTAAGAATGAAAGTAAACAAGTTTAATTTGCGAGTCATGTGGGTGGGGTATTTTAACAAAtgacaagtaaaaaaaaaaaaatcccagaacAATAAAGAATCGCTTTATTGCTGTTAAACTCTGTCCCCAGGACAGTGTAGAAGTTCCACTGATAAAAAGTGAAACTATGGCCAGTCGAGCTCTGTCTTTTCAAAAGATAATCCCAGCTGCTGGGCCCTGGAcactcggggggggggggcggggttcCTCTCGTGAATTAAAATGTAGGCACTCGGACCCTCGACGTTATTTCTCGGAGGGTGAACACATGGTGAAGggcaaagctgccattggcacATGACAAGGTGTGAGAGGTCGAGACCCAGTCAGGTAGCCGGTTCAATGCGTCCCGTTCGGATCAAATAAAACCTTCCGTTTCAAAGGCAGGACTCGGTGTCCTGAACAGAGCCCAGCGTTGCTTCATAGGGATCTCAGCACTTTCATGCGTCGTCTGATTGAACCGATCCCAGTTTAGGATGCGATTCAGCACTTTAAATCACTGTACCGCTGCCTGCCGCCCCCCGGCAGACCGCAGGGAGGGAACCCGATGTTCTGCACTTGTTTTAGCTTGTTTGCACTGGGATGTACGTTTGATTCTGcatattgtatttactgtactttgAAACCCATTGGAAAGGTTCTTGTGAAAactaaatcattaattaataacaacaacaagcagGAATGAAAAAAGCTTCAGGTTTTGAGAAGTTGTGCACAATATACAATCATTCCCTGCTCACCTCCCCCATCAACCAAACCAACAGCAGATAGAACTCCATTAAATGCccaaatatattacaaaacaggGAGACTGAAATGTAGCAAAACTTTAGACTAAAGAGTCAGTGCCTTTTTCTTTCCTAGGTTTTCTCCAGCGGAGTCTGATTGGTGAAGGTTTATTCCTAACCACGCTCAGGCAGGCAGTGGGCCGCTGACCAGTGGGCTCTCACAGGGGAGTCAGAGACTTTAACCTTGAAATCAAAACGCTACTAAAGCCGACTGCTCAGCAAATAGCGTTTCTCTAGCACGATCGCTCTGAGCAGCACGACTCTGGCTTGCATAGCTCATTTAAAGGTGACTCAGACTGCAGCTTGTCGGAGACCACAGAACGTGGCCGAATTCCTCTCCCTGCTCTGCCGCACGGAGTCCCGTTTCCCCGCGGAGGGTAATTATCATACTTCAGTGAAAATGAAACTGGCCGCAGGCTGTGCCGCCACACCCAGGCCTGCAACGCCAGGCACGGGCACGGGGGCAGGCTCTGCTTCGCCCGGTTTCCAAAGGGCGCAATCGTGTGGCGGCCCCAGGGGCGTGCTTCCCTATGCCACAGCTCAAGGGGCCTTGGCAGGGACCCCCACACCGgtttacacacacagaggggCCCCAAAGACTGGGGGGCTCTCTCAGCTTCCTCTGGAGAGGAAATGCCCCTTTCAAAATAGTTTTACCCCACCTGCATCaaagacttaaaataaaaatggctaaATATTATCAGTTTGGAACTTAACTACCTTATAAGTGCACCGTGACAACCACAGGCCAAACCGTGGCACAGAGAGGTGAGAGGTGTGCATCACGGCACTGTGGACCCCTTTCCCACCGGGGGGAAACTTAATTCTAATTTGCATTTTACCCCAAGTGCAAAATCCAGGCCTTCAATTCATATTGAGTGTCAGCGCCTCTTCTTGGCAAGGCCTCGGTATTAAGAGCAGGGAGAAGAAGTCTACCAGGAAGGTCCGACACACCGCCCATTGCTGGCACACCCCGCATGGCATGCAAATCAAGGCAAATCACACTTATCAAATTAGTCGGAAACCCATACGTACagttaaaatagaaatacatttgttttgtaaagcgTAGAATACTCCACGTCTTGTCCCATTAAATATCCCTCTTAAACACCCTGCGTGCCACTGAAGCACAGACACCTTTTCCAGTTGATCCACAGAAAGCAGAATACCCACAAACACAGGCCCCTGTCCGACAGACACACCCGCGGCTCCAAACAGGAAATACAGGTTTCTACCCCCTTCCAGTTTTTAGTTAAAATACAGAAGCTCGTTTAATACTTGAATCTCTAGGCAGGGATTTGAGAGACAAGGCGTCTGGTTTCGCCCATTAATGAAGATTGAGATGGAATTTCCCACTCATTTTATACACTGATATAATCGTGCttcatgcaatttaaataaataaaaggaggGACTAATATATaaaagagaattaaaataaacactgataaCACAAAcgaaaccacacacaaaaacaacaactcttaTTGGTGCTGTGCTTACATctgcagtttaaataataacagtacaaaatgccttttttgcctggaataaaataaaataaaatcatttgcGCTGAGAAACGCTCCCTAAAGGTTGAGTTCGGGGAAAAAAACCATCCGAAGCCATTAGTTTCACCTTAATCTTTGGGTGCAGCTGAACAAGTTTCGAATTCTGAACCCCGGAGCGGTCAGACCGAGACTCCGGGGACGTGGACGGACGGACAGGAAACGAGGGGGACAGGAGGTGCGGCCGGACCCACCACACCCCACCGGCAGAGCGTCCTCTCCAGTCTCTGACAAAGCCCTCCGTTCCCGGGGGTCCGGCCGCTACTGTATGCTCTCGCCCCCCACCACCGACTCGTCGAAGCGGAACCTCTTTGCGAAGGGCGACTCCAGGAAGTTCTCCTTGTCCTCCTGGGCGGGGGGGTGGCCCCACTTGCCGGAGCTCCTCTCCCGGGGGCCGCGGCTGGGCTGGGGGGTCGGGGGGCCGGAGTCGGGGCCACACAGCCACATCCAGGGGTGGGTGAGGCATTCGGCGGCGCTGGGCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158031 lncRNA upstream 125059 2870916 ~ 2885184 (+) True G126050
TU158024 lncRNA upstream 243704 2766255 ~ 2766539 (+) True G126044
TU158014 lncRNA upstream 451986 2557992 ~ 2558257 (+) True G126036
TU157948 lncRNA upstream 489658 2427670 ~ 2520585 (+) True G125986
TU157877 lncRNA upstream 716371 2291835 ~ 2293872 (+) True G125955
TU158053 lncRNA downstream 13283 3081746 ~ 3083587 (+) True G126068
TU158251 lncRNA downstream 487103 3555566 ~ 3558424 (+) True G126215
TU158279 lncRNA downstream 584210 3652673 ~ 3656581 (+) True G126240
TU158294 lncRNA downstream 602339 3670802 ~ 3673176 (+) True G126248
TU158362 lncRNA downstream 657457 3725920 ~ 3730056 (+) True G126301
AMCG00000766 mRNA upstream 32332 2960489 ~ 2977911 (+) True AMCG00000766
AMCG00000764 mRNA upstream 491215 2467362 ~ 2519028 (+) True AMCG00000764
AMCG00000760 mRNA upstream 547759 2423045 ~ 2462484 (+) True AMCG00000760
AMCG00000761 mRNA upstream 619780 2389675 ~ 2390463 (+) True AMCG00000761
AMCG00000762 mRNA upstream 628233 2345321 ~ 2382010 (+) True AMCG00000762
AMCG00000774 mRNA downstream 53885 3122348 ~ 3133195 (+) True AMCG00000774
AMCG00000772 mRNA downstream 73794 3142257 ~ 3155509 (+) True AMCG00000772
AMCG00000773 mRNA downstream 89953 3158416 ~ 3181118 (+) True AMCG00000773
AMCG00000781 mRNA downstream 145697 3214160 ~ 3225281 (+) True AMCG00000781
AMCG00000783 mRNA downstream 157850 3226313 ~ 3233199 (+) True AMCG00000783
TU157662 other upstream 1313996 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 1409604 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 2668472 339640 ~ 341771 (+) False G125561
TU159397 other downstream 5548736 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 7079394 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 8931201 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 12101448 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 12340649 15409112 ~ 15420880 (+) False G128823

Expression Profile