RNA id: TU158524


Basic Information

Item Value
RNA id TU158524
length 1895
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G126445
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4703139 ~ 4708851 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttatcttttgtttgtctttattcatatttatataaatatgaacataattcattatttatattcatatctgtatatatacatacacacatacaaaaggaaaaaaaatagccTTTTTGGCACAAAGATTAGAATGCAAGTACAGTACTTTCCCTCGTCGAAATGTACCACACTACTGCATCTGTCCCAATAGTGTACGAAAAATCAAGCACCAATTGGGTCTGGAACGTGATCAAACCGAGCTGAAGGTGAAGAAGAGACGCAGGGCGAAGGTCAGGGGTGCAAACTGCCCATCGACCTCAGGTACTACAGAGGAGGCAGTTCGTCTACAGAAGAAAGACAAGGATCCTACTGTCTTACTaacctcattaattaataaggCAACAATGTCTCTGGAGTCGGAACGTTCGTCTGTTTGACCGGGGGTTCTGGAATGTACAGCGTTTTTTCTCCATTCATTTCTCTGCAGGAAGTTAGGACTGACTACCAATGTACATCAGCCAGAGATAAAAGCATTTAACGTTTTATATACGAGTTCAATTCCCCCCAGCACGTGTCAGCGTGAGGGATTGACCCCGGCTCTCACAGGCAGTTCAATAACAGCTCCTTCAGGAGAACTCGCATCGCCCCGGGCCAAGGTAAACAGGCTGACGACATTGCAAACTCGCCTCCTTCACCCACGTTCACGCTCTTCAAGACACTCAACGCTTTCATCCGAAATAATGCCTCGGTAGCCGAGGGGAAGCAGAAAATCATCTCAGGATTTCTAAACAGCCCACTGTGTTTCAGTTGTGTTTGTGAACATCACATGCTCGGAAAAAAAACGAAAGGAGAGGAAATGTTTTAAGAGACTCAGTATGGTCACCAGTGGGTTTGGCAAAAACTTGAGGGTGTGGACTTGAGTTACgggaagagagaggaaaaaaaataataattgttaaggGTTTTCAGCACTGAATAAATAACCTGACGTGTTAAAGCAAGGCTGCTTTTACATGTTTGACTGGCCAAATTCAAACCCaattaaacatctttaaaaGAAGGGATTAGTAAATATGAGTTAAGAGCAGATAAACAGTCTTTAAatctaatataaatatttctgtaaGAGTCTTGCTGAACGGGCCTTTTTGGTCAACTGCGCCGTTGTGAATTCATCACAGACTACAAAACATACTAGGTTTAAAATGTGGAATTAAGCCTTTTAAATGAGTTCAGTTCTTCATCTGaaggaataaaaaacatgtaaacatcaTTAATTGCAAGATGGAGAAGAAAACGttaacaatttcaaagattctTCAAAGTAAATATATCAAACATAAGTGCCACGTAAATGTCTTAAAAACTAATAAAGAATCGCAAGAGGAAGGGTTGGCAAATCTGAGaataacaagaaataaatgGACATATTGTGAGTACATGTGGAAATAATTGGAACCAATAATTTAGATTAATTCTACAGTGCCACAGAGTGATTGTTTAAAGGAGACAAACTCATTCTTCCATTCAGAggctttcagtttttctttgctgaaaacataatttgcaCTTTCAgtaaaaactaattattttgtgcagtttcctttcaaaatgtgGGTGATCCCAAAAAAAAGATTCCAGTCGATCACTGGACGAGTCCCAGGGAGTGTCTGTCGTTTATAATGTGTAGTGTCACCACTTTTCTCCGTTGTGTTGCTGCTGTGGGTTGTTGCTCTGACTGGACCGGAACTTCACATTTTGCTGAAACATTCCTTAGCATTGGTCCACACTTGAATTccctTTTTTACACATGCTAATCTGCATAACTGCATAGCTGATAAGAGCCTCTTTTAGATCCTGGTCCTTCTGGCTTTTAAACCGCTCAATGTCCACCCTGGCACTCTGGACGTATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158508 lncRNA downstream 59673 4642680 ~ 4643466 (-) True G126432
TU158506 lncRNA downstream 61798 4641058 ~ 4641341 (-) True G126430
TU158505 lncRNA downstream 64854 4637958 ~ 4638285 (-) True G126429
TU158504 lncRNA downstream 65499 4637367 ~ 4637640 (-) True G126428
TU158437 lncRNA downstream 458098 4244729 ~ 4245041 (-) True G126369
TU158563 lncRNA upstream 64730 4773581 ~ 4777784 (-) True G126476
TU158562 lncRNA upstream 65997 4774848 ~ 4777784 (-) False G126476
TU158667 lncRNA upstream 248287 4957138 ~ 4962530 (-) False AMCG00000838
TU158674 lncRNA upstream 305017 5013868 ~ 5034697 (-) True G126554
TU158684 lncRNA upstream 407203 5116054 ~ 5119036 (-) True G126563
AMCG00000824 mRNA downstream 19498 4669268 ~ 4683641 (-) True AMCG00000824
AMCG00000825 mRNA downstream 52026 4646961 ~ 4651113 (-) True AMCG00000825
AMCG00000820 mRNA downstream 238395 4429747 ~ 4464744 (-) True AMCG00000820
AMCG00000821 mRNA downstream 298998 4401739 ~ 4404141 (-) True AMCG00000821
AMCG00000817 mRNA downstream 315419 4380615 ~ 4387720 (-) True AMCG00000817
AMCG00000836 mRNA upstream 155349 4864200 ~ 4938788 (-) True AMCG00000836
AMCG00000835 mRNA upstream 235366 4944217 ~ 4954174 (-) True AMCG00000835
AMCG00000838 mRNA upstream 248288 4957139 ~ 4982651 (-) True AMCG00000838
AMCG00000839 mRNA upstream 305518 5014369 ~ 5024891 (-) True AMCG00000839
AMCG00000842 mRNA upstream 412256 5121107 ~ 5132844 (-) True AMCG00000842
TU158503 other downstream 66623 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 1046578 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 1553887 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 1569322 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 1653188 3044257 ~ 3049951 (-) True AMCG00000771
TU158856 other upstream 863854 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 2003107 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 2921064 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 4710145 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 5565836 10274687 ~ 10278211 (-) True G127443

Expression Profile