RNA id: TU158563


Basic Information

Item Value
RNA id TU158563
length 2008
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G126476
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4773581 ~ 4777784 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGTATCTTATACTTTCACTCAAGTTTTATTAATCAGCAACTTCACTACAAAGGCTCAGCAATAATAGAAACAATGTAATCTGCTCTAAACTGTGTTACAAttaaacagtaaatacaaagcACAGTAGGGATCACTGCGCACTCAACAACATCTCCTGCACAGAatttaaagtgcaaaatataCCTTACACATACAGGAAGAAAGAATGTCTTTAGCTAAATCACAAAACTGTAACATTATGATTTTTAACAATTAATCTTAGAAATAAAAAGCTAACAATAATATTGAAGTCAAaaccatttcaattacattagattacattagTCAGCTCAAGTCTCCTGAAACATCTGGATCTACACACTACCCTCCCTCTTCCCACAACGACTGAAAACTTGTGTTCACACCTTGCTGTGTTTTGAAATACTGAATGCTGGGGCACACTGTCCCCTGGTCCAACACCACGTCTCCGAGTTTAACCTCATCAACCTGAGCTATCTTTTACATGTAGAgggggaaatacatttatttgacaccATCAGATAAATCACATCCTTGATAATCCTTGATTAATGCAGATTTCTGTGTGAACTTGTTCAGTATTTCCTTCCTCCACCATAGCCTTGGTCCACAGCTGCTCTCTGGGGAGGTCTGCTGTAAGGGTTGTTGAACCGGGCATTGCTATTGTACGGGTTGCTGCTGTTGGGTTGGCTGTTGTACAGGTTGCTGCTGTACGGGTTTCTGTTGGGAccTCTCAAATCCAGATCGTCATCATACCCTCTTGCGGTGGCCTTGGGGGGATTGGCTGGTTTAGAAGATGTGATGGAGGCCTTAGGGATGGGAAAAGACATTCCAGAATTTCGGAACCCTTGGTTTTGGAACACACTCTGACTTTTGAACTTGCTGCTGTAATTCCCCTCATCAGCATCaccatcgtcatcatcatcgtAGCGGGTATAGTCCATTTTGGGATAGGAAAGAGGCATCTGATTCAATGGATTAGACATCCCTATCCTCCGTTTTTCACTTGTTTTGAAATCGTTTGTCATGTTGAATGTCTTCATAGCGGAGTCATCGGTTTTTGATGTGTCCTTACTCTTTTTGCTCTTGTTCCTTCTTGACACACATATCAGTCCTGTCGTTAAACCAATAATAGCCACTCCTCCTACAACACTCACTCCAATGAGAATATCTCTCATGGTATCTACAAATGAAATGAGACAATGAGAATTTGTGGAATCATTCATCATATTCTATTGAACTATACACAAATAAGTGCACATTTTGTATGatacagtaaaaatatattCGTTAATTTACAAAGTTATAAAACAGAAAGTACAATAAATTGCAAAACTAATCAATGCTGGATAGATTTACCTTTCTGATGCAAACATATGTCTCTAGCAAAATTTGAAGAAGACTGAGAATATAGTACACAGAAGTATTTGAAGTATTAGAAATATAATCAGAAGAATAACTCACTGTCAGTCTCTGGAACAAATGCATACAGATGTACATTTGGGGACAAGGaacaaaaaagagaataaacatgttagagaaaaaagacaaagataTGAAGGAAGGAAGCTCGGACACAGATTTTGAGTCCATGAATCATGAGTGTATTTAAGTAATAAATTGAAACAAACCCAAGCATTAGTACACTGTATTGATATGCATTCAGACAACCCGAGTAGACACCATTTCAAACTGCTTATCTGTGATCTATTTGAATGTGTCAGGGGTGTTCAAATGGGCATCTGCTTTAACACGGCAGTGTAATTGTTAGTTCCAGGGAATCAACTGTGTGACTTTCTGTCCAGCTGTGGATGCCCAATGAATGTCTGATTTTTAGAAGAATTactttgtaaaatgaaatataaaagcttatttttctaaatatgatGTGTTGCTGTAAAATAACTGATTTGGAAGGACATGATTTCTTATAAAATTGCCTTTATATTCTGTAGAGATACATAAGCTTTCATTTCAGTCTTTTTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158524 lncRNA downstream 64730 4703139 ~ 4708851 (-) True G126445
TU158508 lncRNA downstream 130115 4642680 ~ 4643466 (-) True G126432
TU158506 lncRNA downstream 132240 4641058 ~ 4641341 (-) True G126430
TU158505 lncRNA downstream 135296 4637958 ~ 4638285 (-) True G126429
TU158504 lncRNA downstream 135941 4637367 ~ 4637640 (-) True G126428
TU158667 lncRNA upstream 179354 4957138 ~ 4962530 (-) False AMCG00000838
TU158674 lncRNA upstream 236084 5013868 ~ 5034697 (-) True G126554
TU158684 lncRNA upstream 338270 5116054 ~ 5119036 (-) True G126563
TU158766 lncRNA upstream 594465 5372249 ~ 5372459 (-) True G126631
TU158803 lncRNA upstream 684783 5462567 ~ 5464052 (-) True G126665
AMCG00000824 mRNA downstream 89940 4669268 ~ 4683641 (-) True AMCG00000824
AMCG00000825 mRNA downstream 122468 4646961 ~ 4651113 (-) True AMCG00000825
AMCG00000820 mRNA downstream 308837 4429747 ~ 4464744 (-) True AMCG00000820
AMCG00000821 mRNA downstream 369440 4401739 ~ 4404141 (-) True AMCG00000821
AMCG00000817 mRNA downstream 385861 4380615 ~ 4387720 (-) True AMCG00000817
AMCG00000836 mRNA upstream 86416 4864200 ~ 4938788 (-) True AMCG00000836
AMCG00000835 mRNA upstream 166433 4944217 ~ 4954174 (-) True AMCG00000835
AMCG00000838 mRNA upstream 179355 4957139 ~ 4982651 (-) True AMCG00000838
AMCG00000839 mRNA upstream 236585 5014369 ~ 5024891 (-) True AMCG00000839
AMCG00000842 mRNA upstream 343323 5121107 ~ 5132844 (-) True AMCG00000842
TU158503 other downstream 137065 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 1117020 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 1624329 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 1639764 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 1723630 3044257 ~ 3049951 (-) True AMCG00000771
TU158856 other upstream 794921 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 1934174 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 2852131 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 4641212 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 5496903 10274687 ~ 10278211 (-) True G127443

Expression Profile