RNA id: TU158587


Basic Information

Item Value
RNA id TU158587
length 445
lncRNA type inter_gene
GC content 0.49
exon number 5
gene id G126500
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4876867 ~ 4880503 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTACATGTTCTGGCTGACTAAATTCTTGACCTGCTGAGCATGGATGATCTCAGGGGTGTCAATCACAGTGGTGTAGCTGGCTCTGTCATGCTCAGCTGAGTGTTTGTACTTCGTCTGGCTCAGAATATCAGTGGCGTTCCTCGCTCTCATGAAGTCAGGGGTGTCTGTTGCCAAAGCCAGCATTCCCTTTCCTTTGATTTCCTGCTCCAGGGACTTCCTGTATTCCCTCTCGTTAAAGATATGAGTAGCATTCTTTGCTCTCAACATGTCCGGAGTTTCCTCTAGTACTGTAAGCCCTTTACCTCTCACACCCTCCTCTAGATCTCTCCTGTACTCTTTCTCTCTGCATGTGCTGAGCTTCCTTTGCAGTCACATAGGTCGGTGTTTCAAAGTCCATCATCGGCTTGCCTCGCTCCTTCTCGTACTTCTCCTTGTACTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158436 lncRNA upstream 631831 4244732 ~ 4245036 (+) True G126368
TU158362 lncRNA upstream 1146811 3725920 ~ 3730056 (+) True G126301
TU158294 lncRNA upstream 1203691 3670802 ~ 3673176 (+) True G126248
TU158279 lncRNA upstream 1220286 3652673 ~ 3656581 (+) True G126240
TU158251 lncRNA upstream 1318443 3555566 ~ 3558424 (+) True G126215
TU158693 lncRNA downstream 240542 5121045 ~ 5124330 (+) True G126568
TU158694 lncRNA downstream 240701 5121204 ~ 5123938 (+) False G126568
TU158695 lncRNA downstream 246056 5126559 ~ 5126808 (+) True G126569
TU158696 lncRNA downstream 246811 5127314 ~ 5127656 (+) True G126570
TU158698 lncRNA downstream 248004 5128507 ~ 5130661 (+) True G126572
AMCG00000832 mRNA upstream 13019 4844092 ~ 4863848 (+) True AMCG00000832
AMCG00000831 mRNA upstream 37987 4833357 ~ 4838880 (+) True AMCG00000831
AMCG00000834 mRNA upstream 52973 4819205 ~ 4823894 (+) True AMCG00000834
AMCG00000833 mRNA upstream 72525 4792109 ~ 4804342 (+) True AMCG00000833
AMCG00000826 mRNA upstream 104858 4752867 ~ 4772009 (+) True AMCG00000826
AMCG00000837 mRNA downstream 144792 5025295 ~ 5034697 (+) True AMCG00000837
AMCG00000840 mRNA downstream 159445 5039948 ~ 5048084 (+) True AMCG00000840
AMCG00000841 mRNA downstream 201353 5081856 ~ 5115984 (+) True AMCG00000841
AMCG00000844 mRNA downstream 341494 5221997 ~ 5265705 (+) True AMCG00000844
AMCG00000845 mRNA downstream 435694 5316197 ~ 5332706 (+) True AMCG00000845
TU157662 other upstream 3180620 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 3276228 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 4535096 339640 ~ 341771 (+) False G125561
TU159397 other downstream 3736696 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 5267354 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 7119161 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 10289408 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 10528609 15409112 ~ 15420880 (+) False G128823

Expression Profile