RNA id: TU158674


Basic Information

Item Value
RNA id TU158674
length 554
lncRNA type sense_over
GC content 0.32
exon number 2
gene id G126554
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5013868 ~ 5034697 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTGCTTCCTGTATTAAGAGtttattgcaaatatatattatattacttgCTATATTATACAAAGTCTGGTCTCATATTTTGAAGATAATGGTCCCATGCAAAAGGTTTGTATCAAAAAGCCCAACCTTGTTAAATTGAATCCAAGTAAAATGTTACGTGCTTTTTCTCCCCCCAATAGTGCCATATTGGGACacaaggtgattttttttttcttttttttttttttttttttttttttttaaaggaatgtcAGCAAGAAAAAAGATAATTCACTTAAGAATAAAGTCTGCTTGATTTTGAAGTGAATCACAAAAAAGGGGTCTTTCAAGGCAGGGGTCAGTGAATTGCTATTGTTTCTTCTAATTACGATATACCCGAGTCCTGTACACATTGTTTCTTAATCTGACACATGAAGTCCTGTATATTAGATGTAAAATATCTTGCATATGTTGGTACTGCACCTTAactttataaacattttctttgccaCCGACTGccttcttttctttaaaaaacaaaacagagaaatcCATTCCAAAAAGCTGCTGTATAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158667 lncRNA downstream 51338 4957138 ~ 4962530 (-) False AMCG00000838
TU158563 lncRNA downstream 236084 4773581 ~ 4777784 (-) True G126476
TU158562 lncRNA downstream 236084 4774848 ~ 4777784 (-) False G126476
TU158524 lncRNA downstream 305017 4703139 ~ 4708851 (-) True G126445
TU158508 lncRNA downstream 370402 4642680 ~ 4643466 (-) True G126432
TU158684 lncRNA upstream 81357 5116054 ~ 5119036 (-) True G126563
TU158766 lncRNA upstream 337552 5372249 ~ 5372459 (-) True G126631
TU158803 lncRNA upstream 427870 5462567 ~ 5464052 (-) True G126665
TU158854 lncRNA upstream 535247 5569944 ~ 5572133 (-) True G126698
TU158942 lncRNA upstream 908689 5943386 ~ 5949894 (-) True G126767
AMCG00000838 mRNA downstream 31217 4957139 ~ 4982651 (-) True AMCG00000838
AMCG00000835 mRNA downstream 59694 4944217 ~ 4954174 (-) True AMCG00000835
AMCG00000836 mRNA downstream 75080 4864200 ~ 4938788 (-) True AMCG00000836
AMCG00000824 mRNA downstream 330227 4669268 ~ 4683641 (-) True AMCG00000824
AMCG00000825 mRNA downstream 362755 4646961 ~ 4651113 (-) True AMCG00000825
AMCG00000842 mRNA upstream 86410 5121107 ~ 5132844 (-) True AMCG00000842
AMCG00000843 mRNA upstream 103260 5137957 ~ 5174410 (-) True AMCG00000843
AMCG00000846 mRNA upstream 244847 5279544 ~ 5316096 (-) True AMCG00000846
AMCG00000854 mRNA upstream 319689 5354386 ~ 5370155 (-) True AMCG00000854
AMCG00000852 mRNA upstream 346443 5381140 ~ 5391829 (-) True AMCG00000852
TU158503 other downstream 377352 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 1357307 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 1864616 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 1880051 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 1963917 3044257 ~ 3049951 (-) True AMCG00000771
TU158856 other upstream 538008 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 1677261 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 2595218 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 4384299 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 5239990 10274687 ~ 10278211 (-) True G127443

Expression Profile