RNA id: TU158696


Basic Information

Item Value
RNA id TU158696
length 343
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G126570
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5127314 ~ 5127656 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACACGCACAGCTCTGTCTATAGCCATCTGAGGTGTGTGATAAAGTGTGAAAAGAAAGTTTGCGCCGCTCTGCACCGCATGTGGGGACAAAGCCTGCAGCGAAccatatttaaatcattttgccTGGGTCAGCAGAGTGTGAAGGTACGAACAGTGAAAGTACTGAAGCAGAAAGTCAATACAGAGTGGGGTGCACAAACCGTACTTGGCTTTAGCCAACTAGGGGTACACAAGGCAATGGGAAACAAACAGTTgcagcaaaagaaaaatctaagaAAGGTCACTTGGCAGAGCAaaagttgtattattgtaaCAGAAATACCCAAAATATAGAATGGGAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158695 lncRNA upstream 506 5126559 ~ 5126808 (+) True G126569
TU158693 lncRNA upstream 2984 5121045 ~ 5124330 (+) True G126568
TU158694 lncRNA upstream 3376 5121204 ~ 5123938 (+) False G126568
TU158587 lncRNA upstream 246811 4876867 ~ 4880503 (+) True G126500
TU158588 lncRNA upstream 249668 4876867 ~ 4877646 (+) False G126500
TU158698 lncRNA downstream 851 5128507 ~ 5130661 (+) True G126572
TU158700 lncRNA downstream 4062 5131718 ~ 5131991 (+) True G126573
TU158701 lncRNA downstream 4718 5132374 ~ 5132956 (+) True G126574
TU158756 lncRNA downstream 222326 5349982 ~ 5350242 (+) True G126621
TU158802 lncRNA downstream 337195 5464851 ~ 5465981 (+) False AMCG00000848
AMCG00000841 mRNA upstream 11330 5081856 ~ 5115984 (+) True AMCG00000841
AMCG00000840 mRNA upstream 79230 5039948 ~ 5048084 (+) True AMCG00000840
AMCG00000837 mRNA upstream 92617 5025295 ~ 5034697 (+) True AMCG00000837
AMCG00000832 mRNA upstream 263466 4844092 ~ 4863848 (+) True AMCG00000832
AMCG00000831 mRNA upstream 288434 4833357 ~ 4838880 (+) True AMCG00000831
AMCG00000844 mRNA downstream 94341 5221997 ~ 5265705 (+) True AMCG00000844
AMCG00000845 mRNA downstream 188541 5316197 ~ 5332706 (+) True AMCG00000845
AMCG00000849 mRNA downstream 269669 5397325 ~ 5404570 (+) True AMCG00000849
AMCG00000847 mRNA downstream 298505 5426161 ~ 5441254 (+) True AMCG00000847
AMCG00000848 mRNA downstream 333645 5461301 ~ 5464884 (+) True AMCG00000848
TU157662 other upstream 3431067 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 3526675 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 4785543 339640 ~ 341771 (+) False G125561
TU159397 other downstream 3489543 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 5020201 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 6872008 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 10042255 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 10281456 15409112 ~ 15420880 (+) False G128823

Expression Profile