RNA id: TU158870


Basic Information

Item Value
RNA id TU158870
length 1547
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G126714
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5719268 ~ 5799635 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtgtgtgtgtgtNtgtgtgtgtgtgtgtgtgtgtgttaagatGTCTGCTCAGCTATTTTATTATAAACGGAATAACCAGGGCAGCAACGCCAATACAACACCTAAGATACAGAGGTGATTCAATCCTTTGAGTCTTCAAAACAATAGTTCTGTTCATATCAAAACTTAGTCAGGTCAAATTGCTTTTAAGCATTTGCCTGCATTGGCCATTAAAGAATTTAAACATTACCAgtactttgttttaaagaaaggttGGGTGGGGTTTTTGGGGGGGGGCACAGATTCCCACTGAACACGATCTCGACGATACAGAGTCACTATAACGAGTCTAGTTTTATTTGTGCATCTACACCGACTCTAGGCAGTGCACTTTCCCGCAACATTtcaatttagttatttttacaaacttaaataaaaaaggacaaatcAACGGTGCAGAGGAGTCGCGTCAAGAGAAATGAATCTGAGTTTTCGTTCAGCTGTAAGACACGGCCGCACGAGAGATAGTAAAACGTGAGTGCAGAGAGTACACAAGATgtcaagagtgtgtgtgtgtgagagagagagaggttatgTTTCTAGGATGCAGTAATGGCTGCTCCTTAGAGAAAGCATAGTATCTGAACACTCCTCCAGCAAAGTCATTTGTGCCAACAGACCGTTCTTCACCCGGTTACTCTGTTCTCACATGACCGACACTAGCCAGTGTCCCAGTTTACCGTACGGGCAGAAACACGTTAAAACAGACAGAACTTTCTACGAGGCGCCGATCAGCGGTTTTCTATACATGGACTATGAAGAATTCTCCAGTTTCCCTGCACGTTGAAGCTAATATGTCGAGGTGGGAAGTGTGAATATTAAGGCAGTAGCTCAATATATTCTCGCACACCGTCAGAGCGAGACTGCGATCGATGGGTGTCACACAGCGACGCACACGTAACACGGAAGGACAGCACATCTAACGAGGAGAAGACAAGGTTAGTGTTGGGAAAATAGCTTCAAAGCTAAATGTTATGTAGAAAAATACAATCCCATGACAAAACACTGTTAAATCTCAATTCACTCATGAGCCGCAGGGCGAACACTCTTGCCTTGAAGAGAAGTTTGACtgattattcatatatatataaaagattcAACGAGTGAGAGTCAGTGTAGTAAGGAACCCAACTGATAactaaacacttttaaaaacactggtTTGTTTCACTTTACACAAGAAATGAGTTCTGATTTTGAACACTTTCCTTTTAGTGGTGACAATTTCTGTACTCGGGGTCCTCGTTCAGATCAAAGCAAACAGCACCGCTCTCTGAAACCTCGCTTAGTCCTGCTGTTCTTGCcatttttgtccttgttttcagACTTCTTTTTCGCTCGGACTTCCCGCATAAGGTCGAAAAACACCTGGGAATAGAAACAGTACTTAAGATACACGTCCGCACCAATTGACAATCAATAACCAATAATTCATCACCAGTACAAATACAGTAGCGAAGCAGTACGCTCAGGAAATCATTATCTAAtcaagtattttaatttcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158853 lncRNA upstream 147336 5569970 ~ 5571932 (+) True G126697
TU158805 lncRNA upstream 251740 5466982 ~ 5467528 (+) True G126667
TU158802 lncRNA upstream 253287 5464851 ~ 5465981 (+) False AMCG00000848
TU158756 lncRNA upstream 369026 5349982 ~ 5350242 (+) True G126621
TU158701 lncRNA upstream 586312 5132374 ~ 5132956 (+) True G126574
TU158964 lncRNA downstream 401274 6200909 ~ 6201605 (+) True G126781
TU158965 lncRNA downstream 404063 6203698 ~ 6206033 (+) True G126782
TU158992 lncRNA downstream 413547 6213182 ~ 6213407 (+) True G126805
TU159107 lncRNA downstream 581339 6380974 ~ 6381195 (+) True G126886
TU159147 lncRNA downstream 873977 6673612 ~ 6674227 (+) True G126919
AMCG00000856 mRNA upstream 150887 5557451 ~ 5568381 (+) True AMCG00000856
AMCG00000855 mRNA upstream 162599 5497622 ~ 5556669 (+) True AMCG00000855
AMCG00000857 mRNA upstream 231769 5473094 ~ 5487499 (+) True AMCG00000857
AMCG00000848 mRNA upstream 254384 5461301 ~ 5464884 (+) True AMCG00000848
AMCG00000847 mRNA upstream 278014 5426161 ~ 5441254 (+) True AMCG00000847
AMCG00000859 mRNA downstream 17486 5817121 ~ 5824643 (+) True AMCG00000859
AMCG00000862 mRNA downstream 139976 5939611 ~ 5949304 (+) True AMCG00000862
AMCG00000868 mRNA downstream 284356 6083991 ~ 6120281 (+) True AMCG00000868
AMCG00000867 mRNA downstream 382270 6181905 ~ 6189062 (+) True AMCG00000867
AMCG00000872 mRNA downstream 390335 6189970 ~ 6193791 (+) True AMCG00000872
TU157662 other upstream 4023021 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 4118629 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 5377497 339640 ~ 341771 (+) False G125561
TU159397 other downstream 2817564 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 4348222 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 6200029 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 9370276 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 9609477 15409112 ~ 15420880 (+) False G128823

Expression Profile