RNA id: TU158942


Basic Information

Item Value
RNA id TU158942
length 686
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G126767
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5943386 ~ 5949894 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTAATCAAAATTCATTTTACTATTACAAAAGAGACGATCCAACTTAATTTTGGGGACACCATAACCTTCCAACCTCACAGACGTATGTACTTAGTATTACacaacatctttatttttatgtttaacagTTTAGGGTTTCACAACAATCACTATCGCTGTCTGTACGGGTTTCCTGTGCTTGCACAAAGTATTGTCTTTCCTTTGTCTTTTCACATTCATACGAGAATGAATCTTTAGTAAAACATTATGATCAGGTATTGTAAAGATGTGATAGTCCCCATTTTAAAACTACACAGAATGGGGGGAAGGGGGAAACCGGGGGGATCAAGAGATGACAATTTACTACAGGAAACAGTTGTTCGTTGTCATCTTTATCtgcaaataaaagtaaaagttgCCTAGAGTGTATCCATTACTTTCCATCTGTCAGAATAGCATAtattaaaagtgcaaaaatgtattttgtaacaatCAGTTATAAATTGTATCTATGTAGccttctattttctttttaaaccatCTTTGTTACTTAATTTCTcgatcagaaaaaaaaagagggggCCTTTGAACACTTACAACATGccaatgtacaaaaaaaaaaaaaaaaaaaaaaaaaaaggatgaaaatgAAAGCCACTGTTTTTGTAATTCAGAGTACTGAATGTTCCAGAATCCCCCTGTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158854 lncRNA downstream 371253 5569944 ~ 5572133 (-) True G126698
TU158803 lncRNA downstream 479334 5462567 ~ 5464052 (-) True G126665
TU158766 lncRNA downstream 570927 5372249 ~ 5372459 (-) True G126631
TU158684 lncRNA downstream 824350 5116054 ~ 5119036 (-) True G126563
TU158674 lncRNA downstream 908689 5013868 ~ 5034697 (-) True G126554
TU159089 lncRNA upstream 384819 6334713 ~ 6335866 (-) True G126873
TU159108 lncRNA upstream 431069 6380963 ~ 6381248 (-) True G126887
TU159209 lncRNA upstream 1170350 7120244 ~ 7125041 (-) True G126977
TU159291 lncRNA upstream 1680021 7629915 ~ 7645722 (-) False G127039
TU159409 lncRNA upstream 2688702 8638596 ~ 8639883 (-) True G127145
AMCG00000865 mRNA downstream 19680 5922771 ~ 5923706 (-) True AMCG00000865
AMCG00000863 mRNA downstream 50632 5860845 ~ 5892754 (-) True AMCG00000863
AMCG00000864 mRNA downstream 87099 5822538 ~ 5856287 (-) True AMCG00000864
AMCG00000861 mRNA downstream 131504 5799381 ~ 5811882 (-) True AMCG00000861
AMCG00000860 mRNA downstream 153607 5782352 ~ 5789779 (-) True AMCG00000860
AMCG00000866 mRNA upstream 35210 5985104 ~ 6010417 (-) True AMCG00000866
AMCG00000875 mRNA upstream 177525 6127419 ~ 6142577 (-) True AMCG00000875
AMCG00000874 mRNA upstream 248697 6198591 ~ 6211393 (-) True AMCG00000874
AMCG00000873 mRNA upstream 304006 6253900 ~ 6289579 (-) True AMCG00000873
AMCG00000880 mRNA upstream 390458 6340352 ~ 6356387 (-) True AMCG00000880
TU158856 other downstream 370359 5572705 ~ 5573027 (-) True G126700
TU158503 other downstream 1306870 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 2286825 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 2794134 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 2809569 3131714 ~ 3133817 (-) False G126096
TU159187 other upstream 762064 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 1680021 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 3469102 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 4324793 10274687 ~ 10278211 (-) True G127443
TU159975 other upstream 4747813 10697707 ~ 10700348 (-) False AMCG00000960

Expression Profile