RNA id: TU158992



Basic Information


Item Value
RNA id TU158992
length 226
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G126805
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6213182 ~ 6213407 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctgatctggaaaagctcctctgtttgatgtggtcaatgcctttcatgattttgaagacttgaatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcaggtccctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU158965 lncRNA upstream 7149 6203698 ~ 6206033 (+) True G126782
TU158964 lncRNA upstream 11577 6200909 ~ 6201605 (+) True G126781
TU158870 lncRNA upstream 413547 5719268 ~ 5799635 (+) True G126714
TU158853 lncRNA upstream 641250 5569970 ~ 5571932 (+) True G126697
TU158805 lncRNA upstream 745654 5466982 ~ 5467528 (+) True G126667
TU159107 lncRNA downstream 167567 6380974 ~ 6381195 (+) True G126886
TU159147 lncRNA downstream 460205 6673612 ~ 6674227 (+) True G126919
TU159121 lncRNA downstream 472022 6685429 ~ 6748609 (+) True G126898
TU159218 lncRNA downstream 1017946 7231353 ~ 7254142 (+) True G126982
TU159276 lncRNA downstream 1396210 7609617 ~ 7613856 (+) True G127033
AMCG00000869 mRNA upstream 14659 6194058 ~ 6198523 (+) True AMCG00000869
AMCG00000872 mRNA upstream 19391 6189970 ~ 6193791 (+) True AMCG00000872
AMCG00000867 mRNA upstream 24120 6181905 ~ 6189062 (+) True AMCG00000867
AMCG00000868 mRNA upstream 92901 6083991 ~ 6120281 (+) True AMCG00000868
AMCG00000862 mRNA upstream 263878 5939611 ~ 5949304 (+) True AMCG00000862
AMCG00000871 mRNA downstream 4973 6218380 ~ 6221405 (+) True AMCG00000871
AMCG00000870 mRNA downstream 19122 6232529 ~ 6252770 (+) True AMCG00000870
AMCG00000878 mRNA downstream 91610 6305017 ~ 6332100 (+) True AMCG00000878
AMCG00000877 mRNA downstream 121341 6334748 ~ 6340034 (+) True AMCG00000877
AMCG00000879 mRNA downstream 143687 6357094 ~ 6361025 (+) True AMCG00000879
TU157662 other upstream 4516935 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 4612543 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 5871411 339640 ~ 341771 (+) False G125561
TU159397 other downstream 2403792 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 3934450 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 5786257 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 8956504 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 9195705 15409112 ~ 15420880 (+) False G128823

Expression Profile