RNA id: TU159108


Basic Information

Item Value
RNA id TU159108
length 286
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G126887
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6380963 ~ 6381248 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccacaggttaacaatcagtccagtcaaaccctaagagagatcaggataaataggaggaggtactaaagggactagcagaattaaaaaccaacaaatcacctgggccagatggtatatttccaacagtacttaaagaaattaggtaaattatttataggccgctaactcaaatattccaaatgacacttagaacaggggatgtgccaactgactggaagacagcaaatgtcaaaccaatccacaagaaaggggacaaaactgagccaggaaattacagaccaatcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159089 lncRNA downstream 45097 6334713 ~ 6335866 (-) True G126873
TU158942 lncRNA downstream 431069 5943386 ~ 5949894 (-) True G126767
TU158854 lncRNA downstream 808830 5569944 ~ 5572133 (-) True G126698
TU158803 lncRNA downstream 916911 5462567 ~ 5464052 (-) True G126665
TU158766 lncRNA downstream 1008504 5372249 ~ 5372459 (-) True G126631
TU159209 lncRNA upstream 738996 7120244 ~ 7125041 (-) True G126977
TU159291 lncRNA upstream 1248667 7629915 ~ 7645722 (-) False G127039
TU159409 lncRNA upstream 2257348 8638596 ~ 8639883 (-) True G127145
TU159428 lncRNA upstream 2382865 8764113 ~ 8764392 (-) True G127159
TU159507 lncRNA upstream 2685592 9066840 ~ 9083586 (-) True G127229
AMCG00000880 mRNA downstream 24576 6340352 ~ 6356387 (-) True AMCG00000880
AMCG00000873 mRNA downstream 91384 6253900 ~ 6289579 (-) True AMCG00000873
AMCG00000874 mRNA downstream 169570 6198591 ~ 6211393 (-) True AMCG00000874
AMCG00000875 mRNA downstream 238386 6127419 ~ 6142577 (-) True AMCG00000875
AMCG00000866 mRNA downstream 370546 5985104 ~ 6010417 (-) True AMCG00000866
AMCG00000883 mRNA upstream 169764 6551012 ~ 6556951 (-) True AMCG00000883
AMCG00000886 mRNA upstream 217604 6598852 ~ 6601477 (-) True AMCG00000886
AMCG00000887 mRNA upstream 243009 6624257 ~ 6662496 (-) True AMCG00000887
AMCG00000885 mRNA upstream 284054 6665302 ~ 6678106 (-) True AMCG00000885
AMCG00000888 mRNA upstream 308320 6689568 ~ 6715587 (-) True AMCG00000888
TU158856 other downstream 807936 5572705 ~ 5573027 (-) True G126700
TU158503 other downstream 1744447 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 2724402 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 3231711 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 3247146 3131714 ~ 3133817 (-) False G126096
TU159187 other upstream 330710 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 1248667 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 3037748 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 3893439 10274687 ~ 10278211 (-) True G127443
TU159975 other upstream 4316459 10697707 ~ 10700348 (-) False AMCG00000960

Expression Profile