RNA id: TU159209


Basic Information

Item Value
RNA id TU159209
length 724
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G126977
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 7120244 ~ 7125041 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTAAGGCGTTTACAACTGTCTGAGCCAGAGAACACATCCATATCTGTGCTTGCTGTAGCTTCAACAGCTGTACAGGTgtgcatgtgtccctgctgatctggaaaagctcctctggtttgatgtagtcgatgcctttcatgacttggatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcaggtcctcagtctctcagtaggactttcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgtccacagtatccagatgagctctaactagtgcattgtacagtctgaacatcactgcccttgttctcaattctacacttttgacagtataacctagcattttgtttgccttttttattgcttccccacattgtttggatggagaaagtgaggagtccacatagactcctaggtctttctcatgcgttacttcttccagttctttTGTAttcaacttgtattttttatatgttaTACTTGGTTTTGTAGTTTGAGGAACCAGGAGTTTTGAATCATGCTTTCACCAAGACATCATGACTTTAGACAGTTCTGTATGTTATAATATCGATATTATTGTTTTGCAGAGGCACTGACCTAACGAAATGCATAgacttttaatgtttaaagatcactgtaatgtaaatcatttttatctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159108 lncRNA downstream 738996 6380963 ~ 6381248 (-) True G126887
TU159089 lncRNA downstream 784378 6334713 ~ 6335866 (-) True G126873
TU158942 lncRNA downstream 1170350 5943386 ~ 5949894 (-) True G126767
TU158854 lncRNA downstream 1548111 5569944 ~ 5572133 (-) True G126698
TU158803 lncRNA downstream 1656192 5462567 ~ 5464052 (-) True G126665
TU159291 lncRNA upstream 504874 7629915 ~ 7645722 (-) False G127039
TU159409 lncRNA upstream 1513555 8638596 ~ 8639883 (-) True G127145
TU159428 lncRNA upstream 1639072 8764113 ~ 8764392 (-) True G127159
TU159507 lncRNA upstream 1941799 9066840 ~ 9083586 (-) True G127229
TU159581 lncRNA upstream 2233307 9358348 ~ 9360596 (-) True G127275
AMCG00000889 mRNA downstream 367780 6748327 ~ 6752464 (-) True AMCG00000889
AMCG00000888 mRNA downstream 404657 6689568 ~ 6715587 (-) True AMCG00000888
AMCG00000885 mRNA downstream 442138 6665302 ~ 6678106 (-) True AMCG00000885
AMCG00000887 mRNA downstream 457748 6624257 ~ 6662496 (-) True AMCG00000887
AMCG00000886 mRNA downstream 518767 6598852 ~ 6601477 (-) True AMCG00000886
AMCG00000898 mRNA upstream 246879 7371920 ~ 7454374 (-) True AMCG00000898
AMCG00000896 mRNA upstream 478216 7603257 ~ 7618404 (-) True AMCG00000896
AMCG00000897 mRNA upstream 1093795 8218836 ~ 8232120 (-) True AMCG00000897
AMCG00000900 mRNA upstream 1165185 8290226 ~ 8296028 (-) True AMCG00000900
AMCG00000899 mRNA upstream 1182844 8307885 ~ 8316601 (-) True AMCG00000899
TU159187 other downstream 386427 6711958 ~ 6733817 (-) False AMCG00000888
TU158856 other downstream 1547217 5572705 ~ 5573027 (-) True G126700
TU158503 other downstream 2483728 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 3463683 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 3970992 3131714 ~ 3149252 (-) True G126096
TU159288 other upstream 504874 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 2293955 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 3149646 10274687 ~ 10278211 (-) True G127443
TU159975 other upstream 3572666 10697707 ~ 10700348 (-) False AMCG00000960
TU160686 other upstream 5607143 12732184 ~ 12751516 (-) True G128160

Expression Profile