RNA id: TU159291


Basic Information

Item Value
RNA id TU159291
length 454
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G127039
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 7629915 ~ 7645722 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccaagaccaaagagctgtccaaggatgtcagggacaacattgtagacctacacaaggctggaatgggctacaagaccatcaccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaataactgtcagtctccctcggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacgggaggatcttgttaatgatctgggaccatagtcaccaagaaaacaattggtaacacactacgccgtgaaggactgaaatcctgcagtgcccgcaaggtccccctgctcaagaaagcacatgtacaggcccgtctgaagtttgccaatgaacatctgaatgattcagagaagaactgggtgaaagtgttgtggtcagatgagaccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159209 lncRNA downstream 504874 7120244 ~ 7125041 (-) True G126977
TU159108 lncRNA downstream 1248667 6380963 ~ 6381248 (-) True G126887
TU159089 lncRNA downstream 1294049 6334713 ~ 6335866 (-) True G126873
TU158942 lncRNA downstream 1680021 5943386 ~ 5949894 (-) True G126767
TU158854 lncRNA downstream 2057782 5569944 ~ 5572133 (-) True G126698
TU159409 lncRNA upstream 992874 8638596 ~ 8639883 (-) True G127145
TU159428 lncRNA upstream 1118391 8764113 ~ 8764392 (-) True G127159
TU159507 lncRNA upstream 1421118 9066840 ~ 9083586 (-) True G127229
TU159581 lncRNA upstream 1712626 9358348 ~ 9360596 (-) True G127275
TU159606 lncRNA upstream 1762471 9408193 ~ 9408469 (-) True G127291
AMCG00000896 mRNA downstream 11511 7603257 ~ 7618404 (-) True AMCG00000896
AMCG00000898 mRNA downstream 175541 7371920 ~ 7454374 (-) True AMCG00000898
AMCG00000889 mRNA downstream 877451 6748327 ~ 6752464 (-) True AMCG00000889
AMCG00000888 mRNA downstream 914328 6689568 ~ 6715587 (-) True AMCG00000888
AMCG00000885 mRNA downstream 951809 6665302 ~ 6678106 (-) True AMCG00000885
AMCG00000897 mRNA upstream 573114 8218836 ~ 8232120 (-) True AMCG00000897
AMCG00000900 mRNA upstream 644504 8290226 ~ 8296028 (-) True AMCG00000900
AMCG00000899 mRNA upstream 662163 8307885 ~ 8316601 (-) True AMCG00000899
AMCG00000901 mRNA upstream 682275 8327997 ~ 8345029 (-) True AMCG00000901
AMCG00000902 mRNA upstream 767721 8413443 ~ 8426125 (-) True AMCG00000902
TU159187 other downstream 896098 6711958 ~ 6733817 (-) False AMCG00000888
TU158856 other downstream 2056888 5572705 ~ 5573027 (-) True G126700
TU158503 other downstream 2993399 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 3973354 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 4480663 3131714 ~ 3149252 (-) True G126096
TU159607 other upstream 1773274 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 2628965 10274687 ~ 10278211 (-) True G127443
TU159975 other upstream 3051985 10697707 ~ 10700348 (-) False AMCG00000960
TU160686 other upstream 5086462 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 5711261 13356983 ~ 13359770 (-) True AMCG00001061

Expression Profile