RNA id: TU159352



Basic Information


Item Value
RNA id TU159352
length 1018
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G127091
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 8288789 ~ 8289806 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTCAGTATAGGAATACATTGGCAGGCTTAGACGGTGCAAAGTTTTTACTCCCAAGCTGAAAATAGATCCCAATAGAGTTTATTGTGTGTATAGAAATGGGATATTGATCAATCTCCAGCCAGGGAGTAGTAATCTTCACAAGCTAAACGTTTTTCCAGGGTCTTTCAAGATGCTTGTGCTGTGAATCTGCTCTAAATGggataatatgtaaaatattcagGACTATGATGAATGCTCTTTTACTAGGCAGACAGAAACTGGTCTTTGGTCTGTCTTTGTTGTTGATTCTGCTGGCTTGCCGTTCACATAGCAGTGTAACATGATTTTAAAGTCTTCGGTGTTGATGTGCACAGGTTGTCTTCCTacagctgatgatgatgatggggTTCTTGCATATGGTCAAAGCTGCTTATGGTACCCAAAATGTTAGCCAACATTTGAGTTCCTCTACAAAATGCACTGGTCAATAGGTTGGCAGGCAAAGTCACTATACATAGTGTAACCTCTCCAAATATGCAAAAAGTAATATTGACTTGGAATCTGTTGACCCAGGTTACAGTCCAGCTGTGTTAAAAGTGAAAGAGTGCTGATGTGTATTTGCAGGGACTCCTTACAGTTGTGTCCCAATATATGGACTCCTGACCTCTGCTGGTTTGGGGTTGTAATTTCTCAAAATGTATCCATGTTCTACCATGGGCTAAACTGCAGCAGCAAGTGAATTCAAGGTCACAGCCCGGTGCTAAAATTCTGTTacagtatttagtttttttgttgttgtttttttacagctaTCTCATAGTATTTGTCTTGAAAGTAAAAATACTAGTTTTGTCAAAGAGATAGATGTGCAGCTGAGACATGAAATATCACAGTCTGATTTAGGGTGCTGACTGAACAGTGTttaaataatagtagtagttttTCACAAACAtctctgaatacatttaataaagtgtATTCTCTTCAGTAAAGAGTATATTTGATTTGACCTTGCaagaatatactttttttacattca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU159285 lncRNA upstream 643069 7629902 ~ 7645720 (+) False G127038
TU159286 lncRNA upstream 643069 7629902 ~ 7645720 (+) False G127038
TU159287 lncRNA upstream 643069 7629902 ~ 7645720 (+) True G127038
TU159276 lncRNA upstream 674933 7609617 ~ 7613856 (+) True G127033
TU159218 lncRNA upstream 1034647 7231353 ~ 7254142 (+) True G126982
TU159357 lncRNA downstream 4712 8294518 ~ 8294873 (+) True G127096
TU159408 lncRNA downstream 348790 8638596 ~ 8639823 (+) True G127144
TU159484 lncRNA downstream 791521 9081327 ~ 9082881 (+) True G127206
TU159589 lncRNA downstream 1073301 9363107 ~ 9377589 (+) True G127278
TU159869 lncRNA downstream 2153187 10442993 ~ 10444937 (+) True G127509
AMCG00000908 mRNA upstream 104764 8182377 ~ 8184025 (+) True AMCG00000908
AMCG00000906 mRNA upstream 124803 8112982 ~ 8163986 (+) True AMCG00000906
AMCG00000894 mRNA upstream 227582 7977159 ~ 8061207 (+) True AMCG00000894
AMCG00000895 mRNA upstream 312736 7957849 ~ 7976053 (+) True AMCG00000895
AMCG00000893 mRNA upstream 346383 7860066 ~ 7942406 (+) True AMCG00000893
AMCG00000907 mRNA downstream 285034 8574840 ~ 8575310 (+) True AMCG00000907
AMCG00000903 mRNA downstream 300862 8590668 ~ 8608633 (+) True AMCG00000903
AMCG00000904 mRNA downstream 319794 8609600 ~ 8616534 (+) True AMCG00000904
AMCG00000905 mRNA downstream 338775 8628581 ~ 8635880 (+) True AMCG00000905
AMCG00000910 mRNA downstream 351868 8641674 ~ 8645197 (+) True AMCG00000910
TU157662 other upstream 6592542 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 6688150 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 7947018 339640 ~ 341771 (+) False G125561
TU159397 other downstream 327393 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 1858051 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 3709858 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 6880105 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 7119306 15409112 ~ 15420880 (+) False G128823

Expression Profile